RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 SPATA17Q96L03 361 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 ZNF212Q9UDV6 495 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 ATP8A1Q9Y2Q0 1164 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 PCP11498 1178 aaKnown RBP13.45□□□□□ -0.26
VPS13A-204ENST00000376634 PLS3P13797 630 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 SOX5P35711 763 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 EPHB4P54760 987 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 RBM6P78332 1123 aaKnown RBP13.45□□□□□ -0.26
VPS13A-204ENST00000376634 SNX19Q92543 992 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 HACD3Q9P035 362 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 MAPKBP1O60336 1514 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 CDC42BPBQ9Y5S2 1711 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 KLRF2D3W0D1 207 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 DYNLT1P63172 113 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 GDAP1Q8TB36 358 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 N4BP2L2Q92802 583 aaPredicted RBP13.45□□□□□ -0.26
VPS13A-204ENST00000376634 ZNF274Q96GC6 653 aaPredicted RBP13.45□□□□□ -0.26
VPS13A-204ENST00000376634 BCL2L12Q9HB09 334 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 HSPD1P10809 573 aaKnown RBP13.45□□□□□ -0.26
VPS13A-204ENST00000376634 CALN1Q9BXU9 219 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 KRT24Q2M2I5 525 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 RNF139Q8WU17 664 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 TCP11Q8WWU5 503 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 SHANK2Q9UPX8 1470 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 PTGDRQ13258 359 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 NR1H4Q96RI1 486 aaPredicted RBP13.45□□□□□ -0.26
VPS13A-204ENST00000376634 DAAM1Q9Y4D1 1078 aa13.45□□□□□ -0.26
VPS13A-204ENST00000376634 OTUD7AQ8TE49 926 aaPredicted RBP13.44□□□□□ -0.26
VPS13A-204ENST00000376634 RMDN2Q96LZ7 410 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 MRPL47Q9HD33 250 aaKnown RBP13.44□□□□□ -0.26
VPS13A-204ENST00000376634 BASP1P80723 227 aaKnown RBP13.44□□□□□ -0.26
VPS13A-204ENST00000376634 TAC1P20366 129 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 TMEM259Q4ZIN3 620 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 MYOM2P54296 1465 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 CTNND1O60716 968 aaKnown RBP13.44□□□□□ -0.26
VPS13A-204ENST00000376634 ME3Q16798 604 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 TAF1BQ53T94 588 aaPredicted RBP13.44□□□□□ -0.26
VPS13A-204ENST00000376634 FAM149B1Q96BN6 582 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 KLHL29Q96CT2 875 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 ABCF3Q9NUQ8 709 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 CDC42BPGQ6DT37 1551 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 ZAP70P43403 619 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 EYA1Q99502 592 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 SUGT1Q9Y2Z0 365 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 BLMP54132 1417 aaPredicted RBP13.44□□□□□ -0.26
VPS13A-204ENST00000376634 FAM135BQ49AJ0 1406 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 UHMK1Q8TAS1 419 aaKnown RBP13.44□□□□□ -0.26
VPS13A-204ENST00000376634 FMO2Q99518 471 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 MMTAG2Q9BU76 263 aaKnown RBP13.44□□□□□ -0.26
VPS13A-204ENST00000376634 ADD3Q9UEY8 706 aaKnown RBP13.44□□□□□ -0.26
VPS13A-204ENST00000376634 SPHKAPQ2M3C7 1700 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 CAPRIN1Q14444 709 aaKnown RBP13.44□□□□□ -0.26
VPS13A-204ENST00000376634 LRRC37BQ96QE4 947 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 ING2Q9H160 280 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 GIMAP4Q9NUV9 329 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 RRP15Q9Y3B9 282 aaKnown RBP13.44□□□□□ -0.26
VPS13A-204ENST00000376634 MT-ND3P03897 115 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 SEPT2Q15019 361 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 DONSONQ9NYP3 566 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 MID2Q9UJV3 735 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 ZFXP17010 805 aaPredicted RBP13.44□□□□□ -0.26
VPS13A-204ENST00000376634 RNF219Q5W0B1 726 aaPredicted RBP13.44□□□□□ -0.26
VPS13A-204ENST00000376634 GSDMAQ96QA5 445 aa13.44□□□□□ -0.26
VPS13A-204ENST00000376634 PSMC2P35998 433 aaKnown RBP13.43□□□□□ -0.26
VPS13A-204ENST00000376634 KCTD2Q14681 263 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 NDUFAF2Q8N183 169 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 TUBGCP2Q9BSJ2 902 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 ZNF577Q9BSK1 485 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 TBK1Q9UHD2 729 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 CARMIL3Q8ND23 1372 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 CLASP1Q7Z460 1538 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 LMNAP02545 664 aaKnown RBP13.43□□□□□ -0.26
VPS13A-204ENST00000376634 GTF2IP78347 998 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 SPATA1Q5VX52 437 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 CMTR1Q8N1G2 835 aaKnown RBP13.43□□□□□ -0.26
VPS13A-204ENST00000376634 TTC30BQ8N4P2 665 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 COG4Q9H9E3 785 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 KMT5AQ9NQR1 393 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 WDR62O43379 1518 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 KDM5CP41229 1560 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 ZSCAN20P17040 1043 aaPredicted RBP13.43□□□□□ -0.26
VPS13A-204ENST00000376634 ATP5JP18859 108 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 ZC3H18Q86VM9 953 aaKnown RBP13.43□□□□□ -0.26
VPS13A-204ENST00000376634 SUN2Q9UH99 717 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 STAT2P52630 851 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 ASPRV1Q53RT3 343 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 CRLF3Q8IUI8 442 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 CDC25BP30305 580 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 TRIM33Q9UPN9 1127 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 GPR162Q16538 588 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 MRFAP1Q9Y605 127 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 DDIT3P35638 169 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 POLE2P56282 527 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 FAM173BQ6P4H8 233 aa13.43□□□□□ -0.26
VPS13A-204ENST00000376634 TTLL1O95922 423 aa13.42□□□□□ -0.26
VPS13A-204ENST00000376634 AFPP02771 609 aaKnown RBP13.42□□□□□ -0.26
VPS13A-204ENST00000376634 SCNN1DP51172 638 aa13.42□□□□□ -0.26
VPS13A-204ENST00000376634 LARP4BQ92615 738 aaKnown RBP13.42□□□□□ -0.26
VPS13A-204ENST00000376634 TRIM55Q9BYV6 548 aa13.42□□□□□ -0.26
VPS13A-204ENST00000376634 CAPN11Q9UMQ6 739 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms