RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 SLC18A3Q16572 532 aa23.26■■□□□ 1.31
UPF3A-202ENST00000375299 SOGA3Q5TF21 947 aa23.26■■□□□ 1.31
UPF3A-202ENST00000375299 USP38Q8NB14 1042 aa23.26■■□□□ 1.31
UPF3A-202ENST00000375299 LINC00116Q8NCU8 138 aa23.26■■□□□ 1.31
UPF3A-202ENST00000375299 RAD54LQ92698 747 aa23.26■■□□□ 1.31
UPF3A-202ENST00000375299 MTMR9Q96QG7 549 aa23.26■■□□□ 1.31
UPF3A-202ENST00000375299 LSM14BQ9BX40 385 aaKnown RBP23.26■■□□□ 1.31
UPF3A-202ENST00000375299 LRRC41Q15345 812 aa23.26■■□□□ 1.31
UPF3A-202ENST00000375299 PPP4R3AQ6IN85 833 aa23.26■■□□□ 1.31
UPF3A-202ENST00000375299 LRIG3Q6UXM1 1119 aa23.26■■□□□ 1.31
UPF3A-202ENST00000375299 DZIP1Q86YF9 867 aaKnown RBP23.26■■□□□ 1.31
UPF3A-202ENST00000375299 ZNF444Q8N0Y2 327 aaPredicted RBP23.26■■□□□ 1.31
UPF3A-202ENST00000375299 GLIS3Q8NEA6 775 aa23.26■■□□□ 1.31
UPF3A-202ENST00000375299 TBC1D5Q92609 795 aa23.26■■□□□ 1.31
UPF3A-202ENST00000375299 TAF1DQ9H5J8 278 aaPredicted RBP23.26■■□□□ 1.31
UPF3A-202ENST00000375299 PLCB1Q9NQ66 1216 aa23.26■■□□□ 1.31
UPF3A-202ENST00000375299 CALCRLQ16602 461 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 CCDC40Q4G0X9 1142 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 BICDL1Q6ZP65 573 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 ARFGAP2Q8N6H7 521 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 ISCUQ9H1K1 167 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 VCPKMTQ9H867 229 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 TMEM59LQ9UK28 342 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 NAV1Q8NEY1 1877 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 SPATA31A5Q5VU36 1347 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 SPATA31A7Q8IWB4 1347 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 LOC102724159A0A0B4J2E5 919 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 GOLGA6L10A6NI86 522 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 POLR2FP61218 127 aaKnown RBP23.25■■□□□ 1.31
UPF3A-202ENST00000375299 PWP2Q15269 919 aaKnown RBP23.25■■□□□ 1.31
UPF3A-202ENST00000375299 TMEM266Q2M3C6 531 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 RNF187Q5TA31 235 aaPredicted RBP23.25■■□□□ 1.31
UPF3A-202ENST00000375299 EIF1ADQ8N9N8 165 aaKnown RBP23.25■■□□□ 1.31
UPF3A-202ENST00000375299 DDX12PQ92771 950 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 LRRC27Q9C0I9 530 aa23.25■■□□□ 1.31
UPF3A-202ENST00000375299 MYH4Q9Y623 1939 aa23.24■■□□□ 1.31
UPF3A-202ENST00000375299 ATAD5Q96QE3 1844 aa23.24■■□□□ 1.31
UPF3A-202ENST00000375299 RNASE9P60153 205 aaKnown RBP23.24■■□□□ 1.31
UPF3A-202ENST00000375299 FKBP3Q00688 224 aaKnown RBP23.24■■□□□ 1.31
UPF3A-202ENST00000375299 ACTN3Q08043 901 aaPredicted RBP23.24■■□□□ 1.31
UPF3A-202ENST00000375299 ZCWPW2Q504Y3 356 aa23.24■■□□□ 1.31
UPF3A-202ENST00000375299 SLC10A5Q5PT55 438 aa23.24■■□□□ 1.31
UPF3A-202ENST00000375299 KLHL7Q8IXQ5 586 aa23.24■■□□□ 1.31
UPF3A-202ENST00000375299 MYOCDQ8IZQ8 938 aa23.24■■□□□ 1.31
UPF3A-202ENST00000375299 GPATCH11Q8N954 259 aa23.24■■□□□ 1.31
UPF3A-202ENST00000375299 BIN2Q9UBW5 565 aaPredicted RBP23.24■■□□□ 1.31
UPF3A-202ENST00000375299 E7EVH7 732 aa23.23■■□□□ 1.31
UPF3A-202ENST00000375299 CES2O00748 559 aa23.23■■□□□ 1.31
UPF3A-202ENST00000375299 PLCB4Q15147 1175 aa23.23■■□□□ 1.31
UPF3A-202ENST00000375299 KIAA0753Q2KHM9 967 aa23.23■■□□□ 1.31
UPF3A-202ENST00000375299 REXO1Q8N1G1 1221 aaKnown RBP23.23■■□□□ 1.31
UPF3A-202ENST00000375299 A1CFQ9NQ94 594 aaKnown RBP23.23■■□□□ 1.31
UPF3A-202ENST00000375299 ERVK-9P63128 1117 aa23.23■■□□□ 1.31
UPF3A-202ENST00000375299 SLC44A5Q8NCS7 719 aa23.23■■□□□ 1.31
UPF3A-202ENST00000375299 TAF4BQ92750 862 aa23.23■■□□□ 1.31
UPF3A-202ENST00000375299 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.23■■□□□ 1.31
UPF3A-202ENST00000375299 JAG2Q9Y219 1238 aa23.23■■□□□ 1.31
UPF3A-202ENST00000375299 A0A087X0T9 212 aa23.22■■□□□ 1.31
UPF3A-202ENST00000375299 FAM228BP0C875 321 aa23.22■■□□□ 1.31
UPF3A-202ENST00000375299 RAPGEF1Q13905 1077 aa23.22■■□□□ 1.31
UPF3A-202ENST00000375299 TBC1D9BQ66K14 1250 aa23.22■■□□□ 1.31
UPF3A-202ENST00000375299 C6orf89Q6UWU4 347 aa23.22■■□□□ 1.31
UPF3A-202ENST00000375299 SNX29Q8TEQ0 813 aa23.22■■□□□ 1.31
UPF3A-202ENST00000375299 PACSIN1Q9BY11 444 aa23.22■■□□□ 1.31
UPF3A-202ENST00000375299 TMEM260Q9NX78 707 aa23.22■■□□□ 1.31
UPF3A-202ENST00000375299 SEC63Q9UGP8 760 aaKnown RBP23.22■■□□□ 1.31
UPF3A-202ENST00000375299 TRAF5O00463 557 aa23.22■■□□□ 1.31
UPF3A-202ENST00000375299 ECHS1P30084 290 aa23.22■■□□□ 1.31
UPF3A-202ENST00000375299 HPDP32754 393 aaPredicted RBP23.22■■□□□ 1.31
UPF3A-202ENST00000375299 MAP2K2P36507 400 aa23.22■■□□□ 1.31
UPF3A-202ENST00000375299 HSD17B3P37058 310 aa23.22■■□□□ 1.31
UPF3A-202ENST00000375299 IFT88Q13099 833 aa23.22■■□□□ 1.31
UPF3A-202ENST00000375299 HLTFQ14527 1009 aaKnown RBP eCLIP23.22■■□□□ 1.31
UPF3A-202ENST00000375299 SH3RF3Q8TEJ3 882 aaPredicted RBP23.22■■□□□ 1.31
UPF3A-202ENST00000375299 RAB34Q9BZG1 259 aa23.22■■□□□ 1.31
UPF3A-202ENST00000375299 POTEMA6NI47 508 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 GCOM1H8Y6P7 765 aaPredicted RBP23.21■■□□□ 1.31
UPF3A-202ENST00000375299 MYZAPP0CAP1 466 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 KCNQ4P56696 695 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 RPS8P62241 208 aaKnown RBP23.21■■□□□ 1.31
UPF3A-202ENST00000375299 DRP2Q13474 957 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 CUL1Q13616 776 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 TMEM119Q4V9L6 283 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 SPTY2D1Q68D10 685 aaPredicted RBP23.21■■□□□ 1.31
UPF3A-202ENST00000375299 ESYT2A0FGR8 921 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 RASA1P20936 1047 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 KLHL30Q0D2K2 578 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 COASYQ13057 564 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 KRT79Q5XKE5 535 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 BARGINQ6ZT62 677 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 KCNK18Q7Z418 384 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 CYFIP2Q96F07 1278 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 CEP63Q96MT8 703 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 NUDT12Q9BQG2 462 aa23.21■■□□□ 1.31
UPF3A-202ENST00000375299 PPANQ9NQ55 473 aaKnown RBP23.21■■□□□ 1.31
UPF3A-202ENST00000375299 SLC37A4O43826 429 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 SMTNP53814 917 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 RPS6KA1Q15418 735 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 ASIC2Q16515 512 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 SMIM5Q71RC9 77 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms