RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 TTC6Q86TZ1 520 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 ENAHQ8N8S7 591 aaPredicted RBP10.07□□□□□ -0.8
TPM3-213ENST00000368545 DDX11Q96FC9 970 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 ZKSCAN3Q9BRR0 538 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 RSRP1Q9BUV0 290 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 KCNQ5Q9NR82 932 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 GINM1Q9NU53 330 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 COL4A3BPQ9Y5P4 624 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 STK36Q9NRP7 1315 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 DDAH1O94760 285 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 ZNF697Q5TEC3 545 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 APOBEC3HQ6NTF7 200 aaKnown RBP10.07□□□□□ -0.8
TPM3-213ENST00000368545 CATIPQ7Z7H3 387 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 ZNF444Q8N0Y2 327 aaPredicted RBP10.07□□□□□ -0.8
TPM3-213ENST00000368545 CMTR1Q8N1G2 835 aaKnown RBP10.07□□□□□ -0.8
TPM3-213ENST00000368545 EAF1Q96JC9 268 aaPredicted RBP10.07□□□□□ -0.8
TPM3-213ENST00000368545 SNX27Q96L92 541 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 R3HDMLQ9H3Y0 253 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 ZSCAN16Q9H4T2 348 aaPredicted RBP10.07□□□□□ -0.8
TPM3-213ENST00000368545 SENP2Q9HC62 589 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 TCP11L1Q9NUJ3 509 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 USP40Q9NVE5 1235 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 KCNMB2Q9Y691 235 aa10.07□□□□□ -0.8
TPM3-213ENST00000368545 COL2A1P02458 1487 aaPredicted RBP10.07□□□□□ -0.8
TPM3-213ENST00000368545 SMIM22K7EJ46 135 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 KLF4O43474 513 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 HLA-DOAP06340 250 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 GTF2A2P52657 109 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 CDC42EP5Q6NZY7 148 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 BRINP2Q9C0B6 783 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 OSBPL5Q9H0X9 879 aaPredicted RBP10.06□□□□□ -0.8
TPM3-213ENST00000368545 CHRDQ9H2X0 955 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 RBM28Q9NW13 759 aaKnown RBP10.06□□□□□ -0.8
TPM3-213ENST00000368545 SNTG2Q9NY99 539 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 SIRPGQ9P1W8 387 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 SAP30BPQ9UHR5 308 aaKnown RBP10.06□□□□□ -0.8
TPM3-213ENST00000368545 FNDC3AQ9Y2H6 1198 aaKnown RBP10.06□□□□□ -0.8
TPM3-213ENST00000368545 TSPY3P0CV98 308 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 TSPY8P0CW00 308 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 IFNAR1P17181 557 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 INPP5BP32019 993 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 PLCD1P51178 756 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 RBM5P52756 815 aaKnown RBP eCLIP10.06□□□□□ -0.8
TPM3-213ENST00000368545 MAP3K10Q02779 954 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 PICALMQ13492 652 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 Q6ZVU0 165 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 DGKHQ86XP1 1220 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 GALNT12Q8IXK2 581 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 WASF1Q92558 559 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 IDI2Q9BXS1 227 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 TRIM55Q9BYV6 548 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 ZNF395Q9H8N7 513 aaPredicted RBP10.06□□□□□ -0.8
TPM3-213ENST00000368545 METTL14Q9HCE5 456 aaKnown RBP10.06□□□□□ -0.8
TPM3-213ENST00000368545 ORC3Q9UBD5 711 aaPredicted RBP10.06□□□□□ -0.8
TPM3-213ENST00000368545 SWAP70Q9UH65 585 aa10.06□□□□□ -0.8
TPM3-213ENST00000368545 PLIN4Q96Q06 1357 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 IGF2BP3O00425 579 aaKnown RBP eCLIP10.05□□□□□ -0.81e-7■■■■□ 23.3
TPM3-213ENST00000368545 EREGO14944 169 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 SGPL1O95470 568 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 CDC27P30260 824 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 CDK8P49336 464 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 TFAP4Q01664 338 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 FAM47AQ5JRC9 791 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 NECAB2Q7Z6G3 386 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 TRIM22Q8IYM9 498 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 FANCBQ8NB91 859 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 C3orf58Q8NDZ4 430 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 HNRNPLLQ8WVV9 542 aaKnown RBP10.05□□□□□ -0.8
TPM3-213ENST00000368545 ANKS1AQ92625 1134 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 DYNLL2Q96FJ2 89 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 MYL10Q9BUA6 226 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 EHD4Q9H223 541 aa10.05□□□□□ -0.8
TPM3-213ENST00000368545 DHX36Q9H2U1 1008 aaKnown RBP10.05□□□□□ -0.8
TPM3-213ENST00000368545 FAM221BA6H8Z2 402 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 FDPSP14324 419 aaKnown RBP10.04□□□□□ -0.8
TPM3-213ENST00000368545 RXRAP19793 462 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 GSTT1P30711 240 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 GRK4P32298 578 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 EIF4A3P38919 411 aaKnown RBP10.04□□□□□ -0.8
TPM3-213ENST00000368545 KRT85P78386 507 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 RELBQ01201 579 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 SSRP1Q08945 709 aaKnown RBP10.04□□□□□ -0.8
TPM3-213ENST00000368545 RAB33AQ14088 237 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 NTRK3Q16288 839 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 HIF1AQ16665 826 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 KLHL40Q2TBA0 621 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 IER5Q5VY09 327 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 RAB11FIP4Q86YS3 637 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 C8orf76Q96K31 380 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 MRGPRX2Q96LB1 330 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 MAP3K14Q99558 947 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 PCDH12Q9NPG4 1184 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 DDX4Q9NQI0 724 aaKnown RBP10.04□□□□□ -0.8
TPM3-213ENST00000368545 LMBRD1Q9NUN5 540 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 SIPA1L1O43166 1804 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 GREB1LQ9C091 1923 aaPredicted RBP10.04□□□□□ -0.8
TPM3-213ENST00000368545 ADGRA2Q96PE1 1338 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 SHTN1A0MZ66 631 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 MBD3O95983 291 aa10.04□□□□□ -0.8
TPM3-213ENST00000368545 CCL5P13501 91 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms