RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 HPDP32754 393 aaPredicted RBP13.38□□□□□ -0.27
CLIP3-201ENST00000360535 CFAP58Q5T655 872 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 LRRC55Q6ZSA7 311 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 C16orf86Q6ZW13 317 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 GPBP1Q86WP2 473 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 MTMR9Q96QG7 549 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 BCCIPQ9P287 314 aaKnown RBP eCLIP13.38□□□□□ -0.27
CLIP3-201ENST00000360535 EBAG9O00559 213 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 TAL1P17542 331 aaPredicted RBP13.37□□□□□ -0.27
CLIP3-201ENST00000360535 FKBP3Q00688 224 aaKnown RBP13.37□□□□□ -0.27
CLIP3-201ENST00000360535 STK17AQ9UEE5 414 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 MYH1P12882 1939 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 CCDC88AQ3V6T2 1871 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 KCNK3O14649 394 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 TLR2O60603 784 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 RPS6KA4O75676 772 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 EPHB4P54760 987 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 ADAM9Q13443 819 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 GRAPQ13588 217 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 FIGNQ5HY92 759 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 ADGRF4Q8IZF3 695 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 GRAPLQ8TC17 118 aaPredicted RBP13.37□□□□□ -0.27
CLIP3-201ENST00000360535 SPAG5Q96R06 1193 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 PVALEFA0A1B0GWK0 134 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 OPA1O60313 960 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 PPP1R2P41236 205 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 SF3A3Q12874 501 aaKnown RBP eCLIP13.37□□□□□ -0.27
CLIP3-201ENST00000360535 IKQ13123 557 aaPredicted RBP13.37□□□□□ -0.27
CLIP3-201ENST00000360535 TTMPQ5BVD1 217 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 MSL3Q8N5Y2 521 aaKnown RBP13.37□□□□□ -0.27
CLIP3-201ENST00000360535 AP1M1Q9BXS5 423 aa13.37□□□□□ -0.27
CLIP3-201ENST00000360535 SHTN1A0MZ66 631 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 LRRC63Q05C16 580 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 NNTQ13423 1086 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 SLC30A10Q6XR72 485 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 DDX42Q86XP3 938 aaKnown RBP eCLIP13.36□□□□□ -0.27
CLIP3-201ENST00000360535 POTEFA5A3E0 1075 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 NDUFAB1O14561 156 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 EDIL3O43854 480 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 CEP104O60308 925 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 POTEIP0CG38 1075 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 MAGEA9P43362 315 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 GUCY1A3Q02108 690 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 CYP4A11Q02928 519 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 PPFIA1Q13136 1202 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 HGSNATQ68CP4 663 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 POTEGQ6S5H5 508 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 POTEEQ6S8J3 1075 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 TAF4BQ92750 862 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 NGLY1Q96IV0 654 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 BCAS3Q9H6U6 928 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 PSTPIP2Q9H939 334 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 LEMD3Q9Y2U8 911 aa13.36□□□□□ -0.27
CLIP3-201ENST00000360535 SLC9A1P19634 815 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 CACNB3P54284 484 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 PPP4CP60510 307 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 CDK17Q00537 523 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 PABPC4Q13310 644 aaKnown RBP eCLIP13.35□□□□□ -0.27
CLIP3-201ENST00000360535 SHROOM1Q2M3G4 852 aaPredicted RBP13.35□□□□□ -0.27
CLIP3-201ENST00000360535 MTMR4Q9NYA4 1195 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 GGA1Q9UJY5 639 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 DLEC1Q9Y238 1755 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 PPP1R11O60927 126 aaPredicted RBP13.35□□□□□ -0.27
CLIP3-201ENST00000360535 PLA2G4BP0C869 781 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 TCP10Q12799 353 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 ASIC2Q16515 512 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 ZNF662Q6ZS27 426 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 ADAT2Q7Z6V5 191 aaKnown RBP13.35□□□□□ -0.27
CLIP3-201ENST00000360535 IFT20Q8IY31 132 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 OR2W6PQ8NHA6 318 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 HAS1Q92839 578 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 JMJD4Q9H9V9 463 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 SPATA31A5Q5VU36 1347 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 SPATA31A7Q8IWB4 1347 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 SFI1A8K8P3 1242 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 NOL4O94818 638 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 CORO7P57737 925 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 USH1GQ495M9 461 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 FAM196AQ6ZSG2 479 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 TRIM31Q9BZY9 425 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 EMILIN3Q9NT22 766 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 FAM169AQ9Y6X4 670 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 ROBO1Q9Y6N7 1651 aa13.35□□□□□ -0.27
CLIP3-201ENST00000360535 CLIC2O15247 247 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 SERPING1P05155 500 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 NR2F2P24468 414 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 FXR2P51116 673 aaKnown RBP eCLIP13.34□□□□□ -0.27
CLIP3-201ENST00000360535 KCNH2Q12809 1159 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 TRAPPC3LQ5T215 181 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 CCDC65Q8IXS2 484 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 DNAJC19Q96DA6 116 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 SCN7AQ01118 1682 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 SNED1Q8TER0 1413 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 RPS6KA5O75582 802 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 HNRNPH3P31942 346 aaKnown RBP13.34□□□□□ -0.27
CLIP3-201ENST00000360535 CASP5P51878 434 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 RHBDL3P58872 404 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 NAA35Q5VZE5 725 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 CUL5Q93034 780 aa13.34□□□□□ -0.27
CLIP3-201ENST00000360535 IKZF4Q9H2S9 585 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms