RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 CABS1Q96KC9 395 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 UHRF1BP1Q6BDS2 1440 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 ECE2O60344 883 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 STX2P32856 288 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 ZNF746Q6NUN9 644 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-202ENST00000357409 NR1H4Q96RI1 486 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-202ENST00000357409 GINM1Q9NU53 330 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 PNMA3Q9UL41 463 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 TOM1L1O75674 476 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 MAP3K6O95382 1288 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 OR1G1P47890 313 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 POU5F1BQ06416 359 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 SAAL1Q96ER3 474 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 GPBP1L1Q9HC44 474 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-202ENST00000357409 ARMCX3Q9UH62 379 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-202ENST00000357409 PCDHB6Q9Y5E3 794 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 E9PMD0 336 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 NR2F2P24468 414 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 TXNRD1Q16881 649 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 ATG3Q9NT62 314 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 IFT140Q96RY7 1462 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 SLC16A4O15374 487 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 OPHN1O60890 802 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 TTLL1O95922 423 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 CTNNA1P35221 906 aaKnown RBP7.98□□□□□ -1.13
VPS13A-202ENST00000357409 SERPINB6P35237 376 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 RGS7P49802 495 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 TRMT10CQ7L0Y3 403 aaKnown RBP7.98□□□□□ -1.13
VPS13A-202ENST00000357409 KRT222Q8N1A0 295 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 CALCOCO1Q9P1Z2 691 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 AXIN2Q9Y2T1 843 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 PP2D1A8MPX8 630 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 TRPA1O75762 1119 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 EXOC3L4Q17RC7 722 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 FAM26FQ5R3K3 315 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 CYTH2Q99418 400 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 FAM118BQ9BPY3 351 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 IFIH1Q9BYX4 1025 aaKnown RBP7.98□□□□□ -1.13
VPS13A-202ENST00000357409 RRAGDQ9NQL2 400 aaPredicted RBP7.98□□□□□ -1.13
VPS13A-202ENST00000357409 KLK14Q9P0G3 267 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 CCDC85CA6NKD9 419 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 ACTN4O43707 911 aaKnown RBP7.98□□□□□ -1.13
VPS13A-202ENST00000357409 CYP21A2P08686 494 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 NLRP10Q86W26 655 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 TBC1D22AQ8WUA7 517 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 GCNAQ96QF7 691 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 FAM217BQ9NTX9 383 aaPredicted RBP7.98□□□□□ -1.13
VPS13A-202ENST00000357409 CCND2P30279 289 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 PLIN5Q00G26 463 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 FYB2Q5VWT5 728 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 FAM47EQ6ZV65 393 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 RNF25Q96BH1 459 aaPredicted RBP7.98□□□□□ -1.13
VPS13A-202ENST00000357409 SERPINB13Q9UIV8 391 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 ZKSCAN5Q9Y2L8 839 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 GPC4O75487 556 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 HDLBPQ00341 1268 aaKnown RBP7.98□□□□□ -1.13
VPS13A-202ENST00000357409 GUCY2DQ02846 1103 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 PRPSAP1Q14558 356 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 C10orf76Q5T2E6 689 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 FAM186BQ8IYM0 893 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 AMNQ9BXJ7 453 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 BHMT2Q9H2M3 363 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 ABCC1P33527 1531 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 TRIM49BA6NDI0 452 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 POLRMTO00411 1230 aaKnown RBP7.98□□□□□ -1.13
VPS13A-202ENST00000357409 PLTPP55058 493 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 CDR2Q01850 454 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 ZNF211Q13398 564 aaPredicted RBP7.98□□□□□ -1.13
VPS13A-202ENST00000357409 TMED2Q15363 201 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 FAM180AQ6UWF9 173 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 MCF2L2Q86YR7 1114 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 CNGA4Q8IV77 575 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 KRT82Q9NSB4 513 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 HAUS2Q9NVX0 235 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 GGT7Q9UJ14 662 aa7.98□□□□□ -1.13
VPS13A-202ENST00000357409 PACSIN2Q9UNF0 486 aaPredicted RBP7.98□□□□□ -1.13
VPS13A-202ENST00000357409 USP17L5A8MUK1 530 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 C6orf222P0C671 652 aaPredicted RBP7.97□□□□□ -1.13
VPS13A-202ENST00000357409 RASEFQ8IZ41 740 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 SIX5Q8N196 739 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 DOLKQ9UPQ8 538 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 NPR1P16066 1061 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 IREB2P48200 963 aaKnown RBP7.97□□□□□ -1.13
VPS13A-202ENST00000357409 ORC1Q13415 861 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.97□□□□□ -1.13
VPS13A-202ENST00000357409 TMEM94Q12767 1356 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 SNRNP48Q6IEG0 339 aaKnown RBP7.97□□□□□ -1.13
VPS13A-202ENST00000357409 MMP19Q99542 508 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 CLCA2Q9UQC9 943 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 MYO1FO00160 1098 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 FAM133BQ5BKY9 247 aaKnown RBP7.97□□□□□ -1.13
VPS13A-202ENST00000357409 PI4KBQ9UBF8 816 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 ABCC4O15439 1325 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 CCNA1P78396 465 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 ATP11AP98196 1134 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 MGAT5BQ3V5L5 792 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 CC2D2BQ6DHV5 1058 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 USH1CQ9Y6N9 552 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 POTEMA6NI47 508 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 CASP14P31944 242 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms