RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 MROH5Q6ZUA9 1318 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 DOCK2Q92608 1830 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 LAMA2P24043 3122 aaKnown RBP8.31□□□□□ -1.08
VPS13A-201ENST00000355766 A6NHS1 94 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 TRIM75PA6NK02 468 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 EYA2O00167 538 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 DHX15O43143 795 aaKnown RBP8.31□□□□□ -1.08
VPS13A-201ENST00000355766 PDGFAP04085 211 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 RPLP1P05386 114 aaKnown RBP8.31□□□□□ -1.08
VPS13A-201ENST00000355766 IFIT2P09913 472 aaKnown RBP8.31□□□□□ -1.08
VPS13A-201ENST00000355766 FOSL2P15408 326 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 SSTR4P31391 388 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 TREML2Q5T2D2 321 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 CDC42EP5Q6NZY7 148 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 PI4K2BQ8TCG2 481 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.31□□□□□ -1.08
VPS13A-201ENST00000355766 MYLIPQ8WY64 445 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 IPO9Q96P70 1041 aaKnown RBP8.31□□□□□ -1.08
VPS13A-201ENST00000355766 LBHD1Q9BQE6 289 aaPredicted RBP8.31□□□□□ -1.08
VPS13A-201ENST00000355766 CEP41Q9BYV8 373 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 PUS3Q9BZE2 481 aaKnown RBP8.31□□□□□ -1.08
VPS13A-201ENST00000355766 PCMTD2Q9NV79 361 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 RAPGEFL1Q9UHV5 662 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 GJD2Q9UKL4 321 aa8.31□□□□□ -1.08
VPS13A-201ENST00000355766 RAD50Q92878 1312 aa8.3□□□□□ -1.08
VPS13A-201ENST00000355766 LOC285556D6RIA3 1793 aa8.3□□□□□ -1.08
VPS13A-201ENST00000355766 DOCK1Q14185 1865 aa8.3□□□□□ -1.08
VPS13A-201ENST00000355766 IGLV1-40P01703 118 aa8.3□□□□□ -1.08
VPS13A-201ENST00000355766 SDSP20132 328 aa8.3□□□□□ -1.08
VPS13A-201ENST00000355766 CES1P23141 567 aa8.3□□□□□ -1.08
VPS13A-201ENST00000355766 GCLCP48506 637 aaPredicted RBP8.3□□□□□ -1.08
VPS13A-201ENST00000355766 IL17RAQ96F46 866 aa8.3□□□□□ -1.08
VPS13A-201ENST00000355766 FAM46AQ96IP4 442 aaKnown RBP8.3□□□□□ -1.08
VPS13A-201ENST00000355766 HHIPQ96QV1 700 aa8.3□□□□□ -1.08
VPS13A-201ENST00000355766 TTYH1Q9H313 450 aaPredicted RBP8.3□□□□□ -1.08
VPS13A-201ENST00000355766 DZANK1Q9NVP4 752 aa8.3□□□□□ -1.08
VPS13A-201ENST00000355766 AKAP2Q9Y2D5 859 aa8.3□□□□□ -1.08
VPS13A-201ENST00000355766 LTBP2Q14767 1821 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 PTPRFP10586 1907 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 H3BRJ5 948 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 GSC2O15499 205 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 SMARCA5O60264 1052 aaPredicted RBP8.29□□□□□ -1.08
VPS13A-201ENST00000355766 PCSK2P16519 638 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 ATP5JP18859 108 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 MPSTP25325 297 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 EIF1AXP47813 144 aaKnown RBP8.29□□□□□ -1.08
VPS13A-201ENST00000355766 CD97P48960 835 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 SMAD3P84022 425 aaKnown RBP8.29□□□□□ -1.08
VPS13A-201ENST00000355766 TNNI3KQ59H18 835 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 CCDC84Q86UT8 332 aaPredicted RBP8.29□□□□□ -1.08
VPS13A-201ENST00000355766 AACSQ86V21 672 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 VGLL2Q8N8G2 317 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 OTUD7AQ8TE49 926 aaPredicted RBP8.29□□□□□ -1.08
VPS13A-201ENST00000355766 GTF3C2Q8WUA4 911 aaPredicted RBP8.29□□□□□ -1.08
VPS13A-201ENST00000355766 SOCS4Q8WXH5 440 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 UTP4Q969X6 686 aaKnown RBP8.29□□□□□ -1.08
VPS13A-201ENST00000355766 EVI5LQ96CN4 794 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 FAM122AQ96E09 287 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 ZNF512BQ96KM6 892 aaPredicted RBP8.29□□□□□ -1.08
VPS13A-201ENST00000355766 CHRDQ9H2X0 955 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.29□□□□□ -1.08
VPS13A-201ENST00000355766 MORF4L1Q9UBU8 362 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 FPGT-TNNI3KV9GXZ4 949 aa8.29□□□□□ -1.08
VPS13A-201ENST00000355766 TMEM265A0A087WTH1 108 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 PDE2AO00408 941 aaPredicted RBP8.28□□□□□ -1.08
VPS13A-201ENST00000355766 CTNND1O60716 968 aaKnown RBP8.28□□□□□ -1.08
VPS13A-201ENST00000355766 IGSF3O75054 1194 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 ENTPD3O75355 529 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 PDE8BO95263 885 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 MED26O95402 600 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 XRCC5P13010 732 aaKnown RBP8.28□□□□□ -1.08
VPS13A-201ENST00000355766 ZKSCAN1P17029 563 aaPredicted RBP8.28□□□□□ -1.08
VPS13A-201ENST00000355766 CYP2B6P20813 491 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 MZF1P28698 734 aaPredicted RBP8.28□□□□□ -1.08
VPS13A-201ENST00000355766 PRDX5P30044 214 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 ANAPC15P60006 121 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 CACNB2Q08289 660 aaPredicted RBP8.28□□□□□ -1.08
VPS13A-201ENST00000355766 PABPC4Q13310 644 aaKnown RBP eCLIP8.28□□□□□ -1.08
VPS13A-201ENST00000355766 BECN1Q14457 450 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 UVSSAQ2YD98 709 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 METTL24Q5JXM2 366 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 ATG9AQ7Z3C6 839 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 ZFPM1Q8IX07 1006 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 WDR66Q8TBY9 1149 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 RUFY2Q8WXA3 655 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 WNT8BQ93098 351 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 IDI2Q9BXS1 227 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 C22orf23Q9BZE7 217 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 IL1RAPL2Q9NP60 686 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 PA2G4Q9UQ80 394 aaKnown RBP8.28□□□□□ -1.08
VPS13A-201ENST00000355766 PLXNB2O15031 1838 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 PHIPQ8WWQ0 1821 aa8.28□□□□□ -1.08
VPS13A-201ENST00000355766 AK9Q5TCS8 1911 aa8.27□□□□□ -1.09
VPS13A-201ENST00000355766 TGFB1P01137 390 aa8.27□□□□□ -1.09
VPS13A-201ENST00000355766 CCND3P30281 292 aaPredicted RBP8.27□□□□□ -1.09
VPS13A-201ENST00000355766 MTMR3Q13615 1198 aa8.27□□□□□ -1.09
VPS13A-201ENST00000355766 PUM3Q15397 648 aaKnown RBP8.27□□□□□ -1.09
VPS13A-201ENST00000355766 SHHQ15465 462 aa8.27□□□□□ -1.09
VPS13A-201ENST00000355766 LRRFIP1Q32MZ4 808 aaKnown RBP8.27□□□□□ -1.09
VPS13A-201ENST00000355766 LRRC24Q50LG9 513 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms