RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 A0A087X0B3 334 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 FSD2A1L4K1 749 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 FKTNO75072 461 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 ZNF286BP0CG31 522 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 IDEP14735 1019 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 TXLNAP40222 546 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 RGS2P41220 211 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 STAT6P42226 847 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 NASPP49321 788 aaPredicted RBP10.35□□□□□ -0.75
USP4-202ENST00000351842 USP11P51784 963 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 UBE2HP62256 183 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 CABP7Q86V35 215 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 UNC45AQ9H3U1 944 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 FAM13BQ9NYF5 915 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 GINS2Q9Y248 185 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 SLC45A1Q9Y2W3 748 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 ZNFX1Q9P2E3 1918 aaKnown RBP10.35□□□□□ -0.75
USP4-202ENST00000351842 SYCE3A1L190 88 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 STRNO43815 780 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 ADCY3O60266 1144 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 EIF3JO75822 258 aaKnown RBP10.35□□□□□ -0.75
USP4-202ENST00000351842 C6orf222P0C671 652 aaPredicted RBP10.35□□□□□ -0.75
USP4-202ENST00000351842 PDIA4P13667 645 aaKnown RBP10.35□□□□□ -0.75
USP4-202ENST00000351842 UBA1P22314 1058 aaKnown RBP10.35□□□□□ -0.75
USP4-202ENST00000351842 TRAPPC10P48553 1259 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 GRB14Q14449 540 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 KRT79Q5XKE5 535 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 SWSAP1Q6NVH7 229 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 CNNM3Q8NE01 707 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 DYDC2Q96IM9 177 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 SPATA33Q96N06 139 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 DDX19AQ9NUU7 478 aaKnown RBP10.35□□□□□ -0.75
USP4-202ENST00000351842 SERTAD1Q9UHV2 236 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 MAPK8IP1Q9UQF2 711 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 E9PMD0 336 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 KRT18P05783 430 aaKnown RBP10.35□□□□□ -0.75
USP4-202ENST00000351842 HSPA1AP0DMV8 641 aaKnown RBP10.35□□□□□ -0.75
USP4-202ENST00000351842 HSPA1BP0DMV9 641 aaKnown RBP10.35□□□□□ -0.75
USP4-202ENST00000351842 PRKAR2AP13861 404 aaKnown RBP10.35□□□□□ -0.75
USP4-202ENST00000351842 SEMA3FQ13275 785 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 LONRF3Q496Y0 759 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 AXDND1Q5T1B0 1012 aaPredicted RBP10.35□□□□□ -0.75
USP4-202ENST00000351842 PLA2G4FQ68DD2 849 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 CREBRFQ8IUR6 639 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 MPHOSPH6Q99547 160 aaKnown RBP10.35□□□□□ -0.75
USP4-202ENST00000351842 TEKT3Q9BXF9 490 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 SLC5A4Q9NY91 659 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 TBC1D7Q9P0N9 293 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 PTCH2Q9Y6C5 1203 aa10.35□□□□□ -0.75
USP4-202ENST00000351842 SNAI1O95863 264 aaPredicted RBP10.34□□□□□ -0.75
USP4-202ENST00000351842 PLCG1P19174 1290 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 PSMC6P62333 389 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 PLCB2Q00722 1185 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 ACVR2BQ13705 512 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 RNF214Q8ND24 703 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 GTF3C2Q8WUA4 911 aaPredicted RBP10.34□□□□□ -0.75
USP4-202ENST00000351842 AFG1LQ8WV93 481 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 FERMT2Q96AC1 680 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 EEF2KMTQ96G04 330 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 JPH1Q9HDC5 661 aaPredicted RBP10.34□□□□□ -0.75
USP4-202ENST00000351842 JADE2Q9NQC1 790 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 SRPRBQ9Y5M8 271 aaKnown RBP10.34□□□□□ -0.75
USP4-202ENST00000351842 SFI1A8K8P3 1242 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 ADCY6O43306 1168 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 ZNF202O95125 648 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 RBM10P98175 930 aaKnown RBP10.34□□□□□ -0.75
USP4-202ENST00000351842 PNOCQ13519 176 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 ECM1Q16610 540 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 RRAGBQ5VZM2 374 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 ADALQ6DHV7 355 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 C4orf32Q8N8J7 132 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 RAB34Q9BZG1 259 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 AGO4Q9HCK5 861 aaKnown RBP10.34□□□□□ -0.75
USP4-202ENST00000351842 DISC1Q9NRI5 854 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 TMEM63CQ9P1W3 806 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 GABBR1Q9UBS5 961 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 PNMA2Q9UL42 364 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 DOCK5Q9H7D0 1870 aa10.34□□□□□ -0.75
USP4-202ENST00000351842 NPHP3-ACAD11A0A0J9YXS1 232 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 CCNE2O96020 404 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 GCFC2P16383 781 aaKnown RBP10.33□□□□□ -0.76
USP4-202ENST00000351842 CCND3P30281 292 aaPredicted RBP10.33□□□□□ -0.76
USP4-202ENST00000351842 NPEPPSP55786 919 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 SOX10P56693 466 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 ZNF792Q3KQV3 632 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 KCNK18Q7Z418 384 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 SHCBP1Q8NEM2 672 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 ETNPPLQ8TBG4 499 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 HPS3Q969F9 1004 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 SLC15A5A6NIM6 579 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 ASB14A6NK59 587 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 CUTAO60888 179 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 MED24O75448 989 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 MCM6Q14566 821 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 UGCGQ16739 394 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 HSP90AA4PQ58FG1 418 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 FAM47CQ5HY64 1035 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 PPP4R3AQ6IN85 833 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 CLEC17AQ6ZS10 378 aa10.33□□□□□ -0.76
USP4-202ENST00000351842 DNERQ8NFT8 737 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms