RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 MAPK8IP1Q9UQF2 711 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 GDAQ9Y2T3 454 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 UBIAD1Q9Y5Z9 338 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 LCTP09848 1927 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 TESPA1A2RU30 521 aaPredicted RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 GOLGA6L19H0YKK7 550 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 IPO5O00410 1097 aaKnown RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 GAS7O60861 476 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 SSBP05455 408 aaKnown RBP eCLIP4.64□□□□□ -1.67
MCF2-201ENST00000338585 PSMC6P62333 389 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 CCDC173Q0VFZ6 552 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 ITGB3BPQ13352 177 aaPredicted RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 MTMR1Q13613 665 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 KMT5BQ4FZB7 885 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 HSP90AA4PQ58FG1 418 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 HYIQ5T013 277 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 KLHL10Q6JEL2 608 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 FASTKD5Q7L8L6 764 aaKnown RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 DYMQ7RTS9 669 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 NCAPG2Q86XI2 1143 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 RIOX2Q8IUF8 465 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 C2orf69Q8N8R5 385 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 TRIML1Q8N9V2 468 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 BRI3BPQ8WY22 251 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 RAD54LQ92698 747 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 BPIFA3Q9BQP9 254 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 UNC45AQ9H3U1 944 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 CUEDC2Q9H467 287 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 MAP3K20Q9NYL2 800 aaKnown RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 STK17AQ9UEE5 414 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 CCL15-CCL14A0A0B4J2E2 113 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 NPHP3-ACAD11A0A0J9YXS1 232 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 PPP1R3GB7ZBB8 358 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 BTBD19C9JJ37 291 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 DHX15O43143 795 aaKnown RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 ATP9AO75110 1047 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 RGS20O76081 388 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 NR3C2P08235 984 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 ATP1A3P13637 1013 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 ERCC3P19447 782 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 STX17P56962 302 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 FKBP1BP68106 108 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 ASIC1P78348 528 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 SETQ01105 290 aaPredicted RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 RAD51AP2Q09MP3 1159 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 SEMA3FQ13275 785 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 CTTNQ14247 550 aaKnown RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 CCL15Q16663 113 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 B3GNT9Q6UX72 402 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 SV2BQ7L1I2 683 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 ANKRD35Q8N283 1001 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 SAMD3Q8N6K7 520 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 MB21D1Q8N884 522 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 MLKLQ8NB16 471 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 CHST13Q8NET6 341 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 DYDC2Q96IM9 177 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 C7orf25Q9BPX7 421 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 EIF2AK1Q9BQI3 630 aaKnown RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 BCAS3Q9H6U6 928 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 MAGEF1Q9HAY2 307 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 AGO4Q9HCK5 861 aaKnown RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 JADE2Q9NQC1 790 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 FANCLQ9NW38 375 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 WRAP73Q9P2S5 460 aaPredicted RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 TELO2Q9Y4R8 837 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 PDHXO00330 501 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 ZBTB39O15060 712 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 SORBS3O60504 671 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 PGK2P07205 417 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 PLA2G4BP0C869 781 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 BCRP11274 1271 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 FCER1AP12319 257 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 OSBPP22059 807 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 RPA1P27694 616 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 PRCPP42785 496 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 ZNF75DP51815 510 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 MYL5Q02045 173 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 PABPC4Q13310 644 aaKnown RBP eCLIP4.63□□□□□ -1.67
MCF2-201ENST00000338585 PPP2R5CQ13362 524 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 TMEM132AQ24JP5 1023 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 SPRYD7Q5W111 196 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 HAUS3Q68CZ6 603 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 NIPA1Q7RTP0 329 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 VSIG10LQ86VR7 867 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 TPH2Q8IWU9 490 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 FAM43AQ8N2R8 423 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 ERMNQ8TAM6 284 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 NSUN6Q8TEA1 469 aaKnown RBP4.63□□□□□ -1.67
MCF2-201ENST00000338585 DDX12PQ92771 950 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 RIT2Q99578 217 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 PTPN18Q99952 460 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 HSD17B14Q9BPX1 270 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 TEKT3Q9BXF9 490 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 TRIM5Q9C035 493 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 PORCNQ9H237 461 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 CTNND2Q9UQB3 1225 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 RABGAP1Q9Y3P9 1069 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 KDM3AQ9Y4C1 1321 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 SOWAHBA6NEL2 793 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 UNCXA6NJT0 531 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms