RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 EEPD1Q7L9B9 569 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 NIPA1Q7RTP0 329 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 DPP9Q86TI2 863 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 ERMNQ8TAM6 284 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 PYM1Q9BRP8 204 aaKnown RBP11.27□□□□□ -0.61
HMGB3-201ENST00000325307 TEKT3Q9BXF9 490 aa11.27□□□□□ -0.61
HMGB3-201ENST00000325307 STRNO43815 780 aa11.26□□□□□ -0.61
HMGB3-201ENST00000325307 CCT6AP40227 531 aaKnown RBP11.26□□□□□ -0.61
HMGB3-201ENST00000325307 SEPT14Q6ZU15 432 aa11.26□□□□□ -0.61
HMGB3-201ENST00000325307 PLEKHH3Q7Z736 793 aa11.26□□□□□ -0.61
HMGB3-201ENST00000325307 TIGD1Q96MW7 591 aa11.26□□□□□ -0.61
HMGB3-201ENST00000325307 CCSER1Q9C0I3 900 aa11.26□□□□□ -0.61
HMGB3-201ENST00000325307 DISC1Q9NRI5 854 aa11.26□□□□□ -0.61
HMGB3-201ENST00000325307 ASTN1O14525 1302 aa11.26□□□□□ -0.61
HMGB3-201ENST00000325307 BCRP11274 1271 aa11.26□□□□□ -0.61
HMGB3-201ENST00000325307 AFMP43652 599 aa11.26□□□□□ -0.61
HMGB3-201ENST00000325307 HTRA3P83110 453 aa11.26□□□□□ -0.61
HMGB3-201ENST00000325307 SLC5A5Q92911 643 aa11.26□□□□□ -0.61
HMGB3-201ENST00000325307 PLCG1P19174 1290 aa11.26□□□□□ -0.61
HMGB3-201ENST00000325307 AGO4Q9HCK5 861 aaKnown RBP11.26□□□□□ -0.61
HMGB3-201ENST00000325307 SAMM50Q9Y512 469 aa11.26□□□□□ -0.61
HMGB3-201ENST00000325307 CA12O43570 354 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 EIF3JO75822 258 aaKnown RBP11.25□□□□□ -0.61
HMGB3-201ENST00000325307 STAM2O75886 525 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 ALDH1A1P00352 501 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 HAUS3Q68CZ6 603 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 KANK3Q6NY19 840 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 GRAMD1CQ8IYS0 662 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 GPRASP2Q96D09 838 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 DNAJC25-GNG10A0A024R161 153 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 ACTN4O43707 911 aaKnown RBP11.25□□□□□ -0.61
HMGB3-201ENST00000325307 SLFN14P0C7P3 912 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 DHX8Q14562 1220 aaKnown RBP11.25□□□□□ -0.61
HMGB3-201ENST00000325307 SASS6Q6UVJ0 657 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 STAMQ92783 540 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 CDHR1Q96JP9 859 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 INPP4AQ96PE3 977 aaPredicted RBP11.25□□□□□ -0.61
HMGB3-201ENST00000325307 RIT2Q99578 217 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 MMTAG2Q9BU76 263 aaKnown RBP11.25□□□□□ -0.61
HMGB3-201ENST00000325307 VAV3Q9UKW4 847 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 SORBS3O60504 671 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 PSMD10O75832 226 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 KCNA4P22459 653 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 PNOCQ13519 176 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 C17orf99Q6UX52 265 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 RBM43Q6ZSC3 357 aaKnown RBP11.25□□□□□ -0.61
HMGB3-201ENST00000325307 NUDT12Q9BQG2 462 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 USP25Q9UHP3 1055 aa11.25□□□□□ -0.61
HMGB3-201ENST00000325307 ADGRA2Q96PE1 1338 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 FOXN1O15353 648 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 COBLO75128 1261 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 SP4Q02446 784 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 CYP4A11Q02928 519 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 OTOP1Q7RTM1 612 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 ABRAQ8N0Z2 381 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 TBC1D22BQ9NU19 505 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.24□□□□□ -0.61
HMGB3-201ENST00000325307 ASB14A6NK59 587 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 MAFGO15525 162 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 ATP9AO75110 1047 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 SPIRE1Q08AE8 756 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 ITGB3BPQ13352 177 aaPredicted RBP11.24□□□□□ -0.61
HMGB3-201ENST00000325307 POSTNQ15063 836 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 MIER3Q7Z3K6 550 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 MAP7D2Q96T17 732 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 UNC45AQ9H3U1 944 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 KDM3AQ9Y4C1 1321 aa11.24□□□□□ -0.61
HMGB3-201ENST00000325307 EML1O00423 815 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 TNPO2O14787 897 aaKnown RBP11.23□□□□□ -0.61
HMGB3-201ENST00000325307 OFD1O75665 1012 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 RGS20O76081 388 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 CCDC192P0DO97 292 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 PPP2R5CQ13362 524 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 E2F4Q16254 413 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 SLC5A4Q9NY91 659 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 KIAA1024Q9UPX6 916 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 POTEB3A0JP26 581 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 BIN1O00499 593 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 AP5Z1O43299 807 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 SSBP05455 408 aaKnown RBP eCLIP11.23□□□□□ -0.61
HMGB3-201ENST00000325307 GRB10Q13322 594 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 POTEBQ6S5H4 581 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 PLCD3Q8N3E9 789 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 PAGE5Q96GU1 130 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 EIF2AK1Q9BQI3 630 aaKnown RBP11.23□□□□□ -0.61
HMGB3-201ENST00000325307 NT5C3AQ9H0P0 336 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 KIAA1468Q9P260 1216 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 STK24Q9Y6E0 443 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 SLC15A5A6NIM6 579 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 EDNRBP24530 442 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 VEGFBP49765 207 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 GRB14Q14449 540 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 TPH2Q8IWU9 490 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 REM2Q8IYK8 340 aaPredicted RBP11.23□□□□□ -0.61
HMGB3-201ENST00000325307 FGD4Q96M96 766 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 RGL1Q9NZL6 768 aa11.23□□□□□ -0.61
HMGB3-201ENST00000325307 POTEFA5A3E0 1075 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 MED24O75448 989 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 PRR29P0C7W0 189 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 SEMA3FQ13275 785 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms