RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 USP17L19D6RCP7 530 aa21.91■■□□□ 1.1
CRLF3-201ENST00000324238 USP17L20D6RJB6 530 aa21.91■■□□□ 1.1
CRLF3-201ENST00000324238 HNRNPH3P31942 346 aaKnown RBP21.91■■□□□ 1.1
CRLF3-201ENST00000324238 CDK17Q00537 523 aa21.91■■□□□ 1.1
CRLF3-201ENST00000324238 USP17L24Q0WX57 530 aa21.91■■□□□ 1.1
CRLF3-201ENST00000324238 USP17L6PQ6QN14 398 aa21.91■■□□□ 1.1
CRLF3-201ENST00000324238 C16orf86Q6ZW13 317 aa21.91■■□□□ 1.1
CRLF3-201ENST00000324238 MYOCDQ8IZQ8 938 aa21.91■■□□□ 1.1
CRLF3-201ENST00000324238 PANK4Q9NVE7 773 aa21.91■■□□□ 1.1
CRLF3-201ENST00000324238 HEXIM1O94992 359 aaKnown RBP21.9■■□□□ 1.1
CRLF3-201ENST00000324238 CORO7P57737 925 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 TCP10Q12799 353 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 MAGEF1Q9HAY2 307 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 SERPINB2P05120 415 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 TCP1P17987 556 aaKnown RBP21.9■■□□□ 1.1
CRLF3-201ENST00000324238 RHBDL3P58872 404 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 KIAA0753Q2KHM9 967 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 ASTE1Q2TB18 679 aaPredicted RBP21.9■■□□□ 1.1
CRLF3-201ENST00000324238 HAS1Q92839 578 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 FAM107BQ9H098 131 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 POTEB3A0JP26 581 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 POTECB2RU33 542 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 MEIS1O00470 390 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 MAGEA9P43362 315 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 HERC4Q5GLZ8 1057 aaPredicted RBP21.9■■□□□ 1.1
CRLF3-201ENST00000324238 SFMBT2Q5VUG0 894 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 POTEBQ6S5H4 581 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 LZTS2Q9BRK4 669 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 DDX4Q9NQI0 724 aaKnown RBP21.9■■□□□ 1.1
CRLF3-201ENST00000324238 PCDHAC2Q9Y5I4 1007 aa21.9■■□□□ 1.1
CRLF3-201ENST00000324238 SLC20A2Q08357 652 aa21.89■■□□□ 1.1
CRLF3-201ENST00000324238 SLC30A10Q6XR72 485 aa21.89■■□□□ 1.1
CRLF3-201ENST00000324238 DDX25Q9UHL0 483 aaKnown RBP21.89■■□□□ 1.1
CRLF3-201ENST00000324238 COL4A3BPQ9Y5P4 624 aa21.89■■□□□ 1.1
CRLF3-201ENST00000324238 GUCY1A3Q02108 690 aa21.89■■□□□ 1.09
CRLF3-201ENST00000324238 TTC31Q49AM3 519 aaPredicted RBP21.89■■□□□ 1.09
CRLF3-201ENST00000324238 FAM26FQ5R3K3 315 aa21.89■■□□□ 1.09
CRLF3-201ENST00000324238 RC3H1Q5TC82 1133 aaKnown RBP21.89■■□□□ 1.09
CRLF3-201ENST00000324238 DDX42Q86XP3 938 aaKnown RBP eCLIP21.89■■□□□ 1.09
CRLF3-201ENST00000324238 DNAJC19Q96DA6 116 aa21.89■■□□□ 1.09
CRLF3-201ENST00000324238 TSG101Q99816 390 aa21.89■■□□□ 1.09
CRLF3-201ENST00000324238 USP17L10C9JJH3 530 aa21.88■■□□□ 1.09
CRLF3-201ENST00000324238 UBAP1LF5GYI3 381 aa21.88■■□□□ 1.09
CRLF3-201ENST00000324238 PPP4CP60510 307 aa21.88■■□□□ 1.09
CRLF3-201ENST00000324238 IKZF4Q9H2S9 585 aa21.88■■□□□ 1.09
CRLF3-201ENST00000324238 HSF2BPO75031 334 aa21.88■■□□□ 1.09
CRLF3-201ENST00000324238 SLC9C1Q4G0N8 1177 aa21.88■■□□□ 1.09
CRLF3-201ENST00000324238 GPR75-ASB3A0A0A6YYF3 556 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 PVALEFA0A1B0GWK0 134 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 TULP1O00294 542 aaPredicted RBP21.87■■□□□ 1.09
CRLF3-201ENST00000324238 EPHB4P54760 987 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 NNTQ13423 1086 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 SAMD1Q6SPF0 538 aaPredicted RBP21.87■■□□□ 1.09
CRLF3-201ENST00000324238 ADGRF4Q8IZF3 695 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 TBC1D16Q8TBP0 767 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 KCNQ5Q9NR82 932 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 DAGLAQ9Y4D2 1042 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 GRIN2DO15399 1336 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 CASP5P51878 434 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 OR2W6PQ8NHA6 318 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 JMJD4Q9H9V9 463 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 PCDHA12Q9UN75 941 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.87■■□□□ 1.09
CRLF3-201ENST00000324238 KRT18P05783 430 aaKnown RBP21.87■■□□□ 1.09
CRLF3-201ENST00000324238 FKBP3Q00688 224 aaKnown RBP21.87■■□□□ 1.09
CRLF3-201ENST00000324238 PPFIA1Q13136 1202 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 CFAP221Q4G0U5 840 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 CASKIN2Q8WXE0 1202 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 AP1M1Q9BXS5 423 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 ZNF287Q9HBT7 754 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 STK17AQ9UEE5 414 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 FAM169AQ9Y6X4 670 aa21.87■■□□□ 1.09
CRLF3-201ENST00000324238 LAMB1P07942 1786 aa21.86■■□□□ 1.09
CRLF3-201ENST00000324238 MYH1P12882 1939 aa21.86■■□□□ 1.09
CRLF3-201ENST00000324238 SLC9A1P19634 815 aa21.86■■□□□ 1.09
CRLF3-201ENST00000324238 NOP2P46087 812 aaKnown RBP21.86■■□□□ 1.09
CRLF3-201ENST00000324238 FXR2P51116 673 aaKnown RBP eCLIP21.86■■□□□ 1.09
CRLF3-201ENST00000324238 LRRC63Q05C16 580 aa21.86■■□□□ 1.09
CRLF3-201ENST00000324238 KLHL30Q0D2K2 578 aa21.86■■□□□ 1.09
CRLF3-201ENST00000324238 RIOX1Q9H6W3 641 aa21.86■■□□□ 1.09
CRLF3-201ENST00000324238 ZNF233A6NK53 670 aa21.86■■□□□ 1.09
CRLF3-201ENST00000324238 LCA5LO95447 670 aa21.86■■□□□ 1.09
CRLF3-201ENST00000324238 GPBP1Q86WP2 473 aa21.86■■□□□ 1.09
CRLF3-201ENST00000324238 ZFPM1Q8IX07 1006 aa21.86■■□□□ 1.09
CRLF3-201ENST00000324238 MTMR4Q9NYA4 1195 aa21.86■■□□□ 1.09
CRLF3-201ENST00000324238 ROBO3Q96MS0 1386 aa21.85■■□□□ 1.09
CRLF3-201ENST00000324238 POTEFA5A3E0 1075 aa21.85■■□□□ 1.09
CRLF3-201ENST00000324238 POTEIP0CG38 1075 aa21.85■■□□□ 1.09
CRLF3-201ENST00000324238 EPS15P42566 896 aa21.85■■□□□ 1.09
CRLF3-201ENST00000324238 VPS72Q15906 364 aa21.85■■□□□ 1.09
CRLF3-201ENST00000324238 POTEGQ6S5H5 508 aa21.85■■□□□ 1.09
CRLF3-201ENST00000324238 POTEEQ6S8J3 1075 aa21.85■■□□□ 1.09
CRLF3-201ENST00000324238 EBAG9O00559 213 aa21.85■■□□□ 1.09
CRLF3-201ENST00000324238 KCNK3O14649 394 aa21.85■■□□□ 1.09
CRLF3-201ENST00000324238 HPDP32754 393 aaPredicted RBP21.85■■□□□ 1.09
CRLF3-201ENST00000324238 SEC24CP53992 1094 aa21.85■■□□□ 1.09
CRLF3-201ENST00000324238 ADAM9Q13443 819 aa21.85■■□□□ 1.09
CRLF3-201ENST00000324238 HLTFQ14527 1009 aaKnown RBP eCLIP21.85■■□□□ 1.09
CRLF3-201ENST00000324238 BACH1O14867 736 aa21.84■■□□□ 1.09
CRLF3-201ENST00000324238 EIF3HO15372 352 aaKnown RBP eCLIP21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms