RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 GRID2IPA4D2P6 1211 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 FAM228BP0C875 321 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 NR1D1P20393 614 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 FKBP3Q00688 224 aaKnown RBP14.79□□□□□ -0.04
SKA3-202ENST00000314759 SLC18A3Q16572 532 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 ECM1Q16610 540 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 RNF187Q5TA31 235 aaPredicted RBP14.79□□□□□ -0.04
SKA3-202ENST00000314759 TBC1D9BQ66K14 1250 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 SMIM5Q71RC9 77 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 MYOCDQ8IZQ8 938 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 PROM2Q8N271 834 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 SNX29Q8TEQ0 813 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 LSM14BQ9BX40 385 aaKnown RBP14.79□□□□□ -0.04
SKA3-202ENST00000314759 PACSIN1Q9BY11 444 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 UBA5Q9GZZ9 404 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 NUCKS1Q9H1E3 243 aaKnown RBP14.79□□□□□ -0.04
SKA3-202ENST00000314759 KANSL2Q9H9L4 492 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 TRAF5O00463 557 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 CLSTN1O94985 981 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 IBSPP21815 317 aaPredicted RBP14.79□□□□□ -0.04
SKA3-202ENST00000314759 ARID5AQ03989 594 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 PSMD2Q13200 908 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 CCDC24Q8N4L8 307 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 ZNF473Q8WTR7 871 aaKnown RBP14.79□□□□□ -0.04
SKA3-202ENST00000314759 ZKSCAN4Q969J2 545 aaPredicted RBP14.79□□□□□ -0.04
SKA3-202ENST00000314759 ATXN2Q99700 1313 aaKnown RBP14.79□□□□□ -0.04
SKA3-202ENST00000314759 IRS2Q9Y4H2 1338 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 RAD51CO43502 376 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 HDLBPQ00341 1268 aaKnown RBP14.78□□□□□ -0.04
SKA3-202ENST00000314759 PDIA5Q14554 519 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 KIAA0753Q2KHM9 967 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 TMEM266Q2M3C6 531 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 CCDC40Q4G0X9 1142 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 FOXR2Q6PJQ5 311 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 DNAJC19Q96DA6 116 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 EYA3Q99504 573 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 ADAMTS1Q9UHI8 967 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 MAST2Q6P0Q8 1798 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 PPP1R37O75864 691 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 CDK8P49336 464 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 TMEM119Q4V9L6 283 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 KRT79Q5XKE5 535 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 WHAMMQ8TF30 809 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 ATP6V1G3Q96LB4 118 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.78□□□□□ -0.04
SKA3-202ENST00000314759 FGFBP2Q9BYJ0 223 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 SUFUQ9UMX1 484 aa14.78□□□□□ -0.04
SKA3-202ENST00000314759 ESYT2A0FGR8 921 aa14.77□□□□□ -0.04
SKA3-202ENST00000314759 DDR1Q08345 913 aa14.77□□□□□ -0.04
SKA3-202ENST00000314759 COASYQ13057 564 aa14.77□□□□□ -0.04
SKA3-202ENST00000314759 IFT88Q13099 833 aa14.77□□□□□ -0.04
SKA3-202ENST00000314759 ENOX2Q16206 610 aaKnown RBP14.77□□□□□ -0.04
SKA3-202ENST00000314759 DDB1Q16531 1140 aa14.77□□□□□ -0.04
SKA3-202ENST00000314759 PTGISQ16647 500 aa14.77□□□□□ -0.04
SKA3-202ENST00000314759 MARCH10Q8NA82 808 aaPredicted RBP14.77□□□□□ -0.04
SKA3-202ENST00000314759 USP38Q8NB14 1042 aa14.77□□□□□ -0.04
SKA3-202ENST00000314759 NLRP3Q96P20 1036 aa14.77□□□□□ -0.04
SKA3-202ENST00000314759 CCT8L2Q96SF2 557 aa14.77□□□□□ -0.04
SKA3-202ENST00000314759 LUC7LQ9NQ29 371 aaKnown RBP14.77□□□□□ -0.04
SKA3-202ENST00000314759 SNED1Q8TER0 1413 aa14.77□□□□□ -0.05
SKA3-202ENST00000314759 BAG3O95817 575 aa14.77□□□□□ -0.05
SKA3-202ENST00000314759 PPP4CP60510 307 aa14.77□□□□□ -0.05
SKA3-202ENST00000314759 SLC51AQ86UW1 340 aa14.77□□□□□ -0.05
SKA3-202ENST00000314759 KLHL7Q8IXQ5 586 aa14.77□□□□□ -0.05
SKA3-202ENST00000314759 NEDD1Q8NHV4 660 aa14.77□□□□□ -0.05
SKA3-202ENST00000314759 COA7Q96BR5 231 aa14.77□□□□□ -0.05
SKA3-202ENST00000314759 TMEM59LQ9UK28 342 aa14.77□□□□□ -0.05
SKA3-202ENST00000314759 CEP83Q9Y592 693 aa14.77□□□□□ -0.05
SKA3-202ENST00000314759 USP17L5A8MUK1 530 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 MYBP10242 640 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 SMARCA1P28370 1054 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 MDH1P40925 334 aaKnown RBP14.76□□□□□ -0.05
SKA3-202ENST00000314759 SETQ01105 290 aaPredicted RBP14.76□□□□□ -0.05
SKA3-202ENST00000314759 ITGB3BPQ13352 177 aaPredicted RBP14.76□□□□□ -0.05
SKA3-202ENST00000314759 RAPGEF1Q13905 1077 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 SPATS2Q86XZ4 545 aaKnown RBP14.76□□□□□ -0.05
SKA3-202ENST00000314759 FAM133AQ8N9E0 248 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 C1orf131Q8NDD1 294 aaKnown RBP14.76□□□□□ -0.05
SKA3-202ENST00000314759 CEP95Q96GE4 821 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 PAGR1Q9BTK6 254 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 RAB34Q9BZG1 259 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 DONSONQ9NYP3 566 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 TBC1D7Q9P0N9 293 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 PLAAQ9Y263 795 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 HSPA9P38646 679 aaKnown RBP14.76□□□□□ -0.05
SKA3-202ENST00000314759 KCTD19Q17RG1 926 aaPredicted RBP14.76□□□□□ -0.05
SKA3-202ENST00000314759 CEP85LQ5SZL2 805 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 NLRP14Q86W24 1093 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 TRIM59Q8IWR1 403 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 WDR66Q8TBY9 1149 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 MYCBPAPQ8TBZ2 947 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 GJA10Q969M2 543 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 LRRC27Q9C0I9 530 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 AIPL1Q9NZN9 384 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 ZNF335Q9H4Z2 1342 aaPredicted RBP14.76□□□□□ -0.05
SKA3-202ENST00000314759 HMGB1P1B2RPK0 211 aaPredicted RBP14.76□□□□□ -0.05
SKA3-202ENST00000314759 KCNQ4P56696 695 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 ACTN3Q08043 901 aaPredicted RBP14.76□□□□□ -0.05
SKA3-202ENST00000314759 KLHL30Q0D2K2 578 aa14.76□□□□□ -0.05
SKA3-202ENST00000314759 FAM26FQ5R3K3 315 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms