RNA–Protein interactions for RNA: ENST00000277817.10

HERC4-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,371 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-201ENST00000277817 SIMC1Q8NDZ2 872 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 NRSN2Q9GZP1 204 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 MBIPQ9NS73 344 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 FOCADQ5VW36 1801 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 CACNA1FO60840 1977 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 DDX3YO15523 660 aaKnown RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 PTPN11Q06124 597 aaPredicted RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 NCAPHQ15003 741 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 LCE2DQ5TA82 110 aaPredicted RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 SPATA1Q5VX52 437 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 JAKMIP3Q5VZ66 844 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 ABHD17CQ6PCB6 329 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 CCDC73Q6ZRK6 1079 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 SLFN12Q8IYM2 578 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 CCDC89Q8N998 374 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 SPC24Q8NBT2 197 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 LSM14AQ8ND56 463 aaKnown RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 STK35Q8TDR2 534 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 TNPO1Q92973 898 aaKnown RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 FMNL2Q96PY5 1086 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 GDF15Q99988 308 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 OXCT2Q9BYC2 517 aaPredicted RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 TRIM5Q9C035 493 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 TSPY26PQ9H489 355 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 PMM2O15305 246 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 SCG5P05408 212 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 POLR3DP05423 398 aaPredicted RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 MX1P20591 662 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 RBM10P98175 930 aaKnown RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 CENPCQ03188 943 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 TAF7Q15545 349 aaPredicted RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 C8orf34Q49A92 452 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 COL13A1Q5TAT6 717 aaPredicted RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 LARP1BQ659C4 914 aaKnown RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 TTBK2Q6IQ55 1244 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 OVCH2Q7RTZ1 564 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 SCUBE1Q8IWY4 988 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 AHI1Q8N157 1196 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 NBPF15Q8N660 670 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 OR13H1Q8NG92 308 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 TBC1D32Q96NH3 1257 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 LRRC27Q9C0I9 530 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 MARK1Q9P0L2 795 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 CCDC39Q9UFE4 941 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 MORC2Q9Y6X9 1032 aaPredicted RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 DDX60LQ5H9U9 1706 aaKnown RBP3.32□□□□□ -1.88
HERC4-201ENST00000277817 CACNA1SQ13698 1873 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 CBFA2T2O43439 604 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 NBNO60934 754 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 TATP17735 454 aaPredicted RBP3.32□□□□□ -1.88
HERC4-201ENST00000277817 TNFAIP3P21580 790 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 PBX2P40425 430 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 NRLP54845 237 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 CCDC173Q0VFZ6 552 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 EFR3AQ14156 821 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 PUM3Q15397 648 aaKnown RBP3.32□□□□□ -1.88
HERC4-201ENST00000277817 FAM133BQ5BKY9 247 aaKnown RBP3.32□□□□□ -1.88
HERC4-201ENST00000277817 TTLL5Q6EMB2 1281 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 UNC5AQ6ZN44 842 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 ERC1Q8IUD2 1116 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 DEPTORQ8TB45 409 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 TMEM40Q8WWA1 233 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 TTC17Q96AE7 1141 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 JAKMIP1Q96N16 626 aaKnown RBP3.32□□□□□ -1.88
HERC4-201ENST00000277817 TMX4Q9H1E5 349 aaPredicted RBP3.32□□□□□ -1.88
HERC4-201ENST00000277817 KMT5AQ9NQR1 393 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 AAASQ9NRG9 546 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 LRRFIP2Q9Y608 721 aaKnown RBP3.32□□□□□ -1.88
HERC4-201ENST00000277817 WDR33Q9C0J8 1336 aaKnown RBP3.32□□□□□ -1.88
HERC4-201ENST00000277817 LOC102724428A0A0B4J2F2 783 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 SYCE3A1L190 88 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 TPP1O14773 563 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 TUSC2O75896 110 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 NR3C2P08235 984 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 NME1P15531 152 aaKnown RBP3.32□□□□□ -1.88
HERC4-201ENST00000277817 PDCP20941 246 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 SIK1P57059 783 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 CABP4P57796 275 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 UBAP2LQ14157 1087 aaKnown RBP3.32□□□□□ -1.88
HERC4-201ENST00000277817 ATP13A4Q4VNC1 1196 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 COBLL1Q53SF7 1204 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 ADAMTSL4Q6UY14 1074 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 MPRIPQ6WCQ1 1025 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 FCHSD1Q86WN1 690 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 C16orf71Q8IYS4 520 aaPredicted RBP3.32□□□□□ -1.88
HERC4-201ENST00000277817 SMC1BQ8NDV3 1235 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 COG1Q8WTW3 980 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 ZHX3Q9H4I2 956 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 SLC52A2Q9HAB3 445 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 PDRG1Q9NUG6 133 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 APOBEC2Q9Y235 224 aaKnown RBP3.32□□□□□ -1.88
HERC4-201ENST00000277817 AK9Q5TCS8 1911 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 HIP1O00291 1037 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 LTFP02788 710 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 SETSIPP0DME0 302 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 CASTP20810 708 aaKnown RBP3.32□□□□□ -1.88
HERC4-201ENST00000277817 AGFG1P52594 562 aaKnown RBP3.32□□□□□ -1.88
HERC4-201ENST00000277817 HTRA3P83110 453 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 TCIRG1Q13488 830 aa3.32□□□□□ -1.88
HERC4-201ENST00000277817 VPS53Q5VIR6 699 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms