RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PRPF6O94906 941 aaKnown RBP23.54■■□□□ 1.36
TRIM28-201ENST00000253024 PLCG2P16885 1265 aa23.54■■□□□ 1.36
TRIM28-201ENST00000253024 SHMT1P34896 483 aa23.54■■□□□ 1.36
TRIM28-201ENST00000253024 WDR93Q6P2C0 686 aa23.54■■□□□ 1.36
TRIM28-201ENST00000253024 GJB7Q6PEY0 223 aa23.54■■□□□ 1.36
TRIM28-201ENST00000253024 KLHL7Q8IXQ5 586 aa23.54■■□□□ 1.36
TRIM28-201ENST00000253024 GUF1Q8N442 669 aaKnown RBP23.54■■□□□ 1.36
TRIM28-201ENST00000253024 TRIM58Q8NG06 486 aa23.54■■□□□ 1.36
TRIM28-201ENST00000253024 COL4A3BPQ9Y5P4 624 aa23.54■■□□□ 1.36
TRIM28-201ENST00000253024 COL22A1Q8NFW1 1626 aaPredicted RBP23.54■■□□□ 1.36
TRIM28-201ENST00000253024 PNMA6FA0A0J9YX94 578 aa23.53■■□□□ 1.36
TRIM28-201ENST00000253024 IL1R1P14778 569 aa23.53■■□□□ 1.36
TRIM28-201ENST00000253024 KLRC1P26715 233 aa23.53■■□□□ 1.36
TRIM28-201ENST00000253024 MEX3CQ5U5Q3 659 aaKnown RBP23.53■■□□□ 1.36
TRIM28-201ENST00000253024 SH2D3CQ8N5H7 860 aa23.53■■□□□ 1.36
TRIM28-201ENST00000253024 RETREG2Q8NC44 543 aa23.53■■□□□ 1.36
TRIM28-201ENST00000253024 JRKLQ9Y4A0 524 aa23.53■■□□□ 1.36
TRIM28-201ENST00000253024 SLC9A1P19634 815 aa23.53■■□□□ 1.36
TRIM28-201ENST00000253024 ADAM9Q13443 819 aa23.53■■□□□ 1.36
TRIM28-201ENST00000253024 VPS72Q15906 364 aa23.53■■□□□ 1.36
TRIM28-201ENST00000253024 CDC42EP5Q6NZY7 148 aa23.53■■□□□ 1.36
TRIM28-201ENST00000253024 FAM71BQ8TC56 605 aa23.53■■□□□ 1.36
TRIM28-201ENST00000253024 AFAP1L1Q8TED9 768 aa23.53■■□□□ 1.36
TRIM28-201ENST00000253024 A0A087X0T9 212 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 GOLGA6BA6NDN3 693 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 ZBTB39O15060 712 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 FAM228BP0C875 321 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 TSEN2Q8NCE0 465 aaKnown RBP23.52■■□□□ 1.36
TRIM28-201ENST00000253024 CENPHQ9H3R5 247 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 HYOU1Q9Y4L1 999 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 TMCO5BA8MYB1 307 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 ATP1A2P50993 1020 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 FXR2P51116 673 aaKnown RBP eCLIP23.52■■□□□ 1.362e-12■■■■□ 19.6
TRIM28-201ENST00000253024 KIAA0753Q2KHM9 967 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 TBC1D10BQ4KMP7 808 aaPredicted RBP23.52■■□□□ 1.36
TRIM28-201ENST00000253024 PDXDC1Q6P996 788 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 ALS2CR12Q96Q35 445 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 BMP2KQ9NSY1 1161 aaPredicted RBP23.52■■□□□ 1.36
TRIM28-201ENST00000253024 AGPSO00116 658 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 TRIM37O94972 964 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 EEF2P13639 858 aaKnown RBP23.52■■□□□ 1.36
TRIM28-201ENST00000253024 PLS1Q14651 629 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 SEPT2Q15019 361 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 TLR10Q9BXR5 811 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 STK17AQ9UEE5 414 aa23.52■■□□□ 1.36
TRIM28-201ENST00000253024 DDX60LQ5H9U9 1706 aaKnown RBP23.51■■□□□ 1.35
TRIM28-201ENST00000253024 NOL4O94818 638 aa23.51■■□□□ 1.35
TRIM28-201ENST00000253024 NOP2P46087 812 aaKnown RBP23.51■■□□□ 1.35
TRIM28-201ENST00000253024 FKBP3Q00688 224 aaKnown RBP23.51■■□□□ 1.35
TRIM28-201ENST00000253024 ASPRV1Q53RT3 343 aa23.51■■□□□ 1.35
TRIM28-201ENST00000253024 SFMBT2Q5VUG0 894 aa23.51■■□□□ 1.35
TRIM28-201ENST00000253024 LRRC31Q6UY01 552 aa23.51■■□□□ 1.35
TRIM28-201ENST00000253024 PIGOQ8TEQ8 1089 aa23.51■■□□□ 1.35
TRIM28-201ENST00000253024 DNAJC5Q9H3Z4 198 aa23.51■■□□□ 1.35
TRIM28-201ENST00000253024 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.51■■□□□ 1.35
TRIM28-201ENST00000253024 SCAF8Q9UPN6 1271 aaKnown RBP23.51■■□□□ 1.35
TRIM28-201ENST00000253024 PPEF1O14829 653 aaPredicted RBP23.51■■□□□ 1.35
TRIM28-201ENST00000253024 SCFD1Q8WVM8 642 aa23.51■■□□□ 1.35
TRIM28-201ENST00000253024 ZNF622Q969S3 477 aaKnown RBP eCLIP23.51■■□□□ 1.35
TRIM28-201ENST00000253024 MAGEF1Q9HAY2 307 aa23.51■■□□□ 1.35
TRIM28-201ENST00000253024 NFU1Q9UMS0 254 aa23.51■■□□□ 1.35
TRIM28-201ENST00000253024 DDTLA6NHG4 134 aaPredicted RBP23.5■■□□□ 1.35
TRIM28-201ENST00000253024 FAM153BP0C7A2 387 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 NR2F2P24468 414 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 MRPL12P52815 198 aaKnown RBP23.5■■□□□ 1.35
TRIM28-201ENST00000253024 ZYXQ15942 572 aaKnown RBP23.5■■□□□ 1.35
TRIM28-201ENST00000253024 FAM153CQ494X1 144 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 MAP9Q49MG5 647 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 C8orf74Q6P047 294 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 GOLGA5Q8TBA6 731 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 ACBD3Q9H3P7 528 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 RIC8AQ9NPQ8 531 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 EMILIN3Q9NT22 766 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 RGL1Q9NZL6 768 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 FAM153AQ9UHL3 310 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 MYO1CO00159 1063 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 ZBTB5O15062 677 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 KRT14P02533 472 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 GUCY2DQ02846 1103 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 KLHDC7AQ5VTJ3 777 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 HGSNATQ68CP4 663 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 CCDC84Q86UT8 332 aaPredicted RBP23.5■■□□□ 1.35
TRIM28-201ENST00000253024 KRT12Q99456 494 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 PKD2L1Q9P0L9 805 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 PCDHB13Q9Y5F0 798 aa23.5■■□□□ 1.35
TRIM28-201ENST00000253024 COL5A3P25940 1745 aaPredicted RBP23.5■■□□□ 1.35
TRIM28-201ENST00000253024 CARSP49589 748 aaKnown RBP23.49■■□□□ 1.35
TRIM28-201ENST00000253024 KLHL30Q0D2K2 578 aa23.49■■□□□ 1.35
TRIM28-201ENST00000253024 MAEAQ7L5Y9 396 aa23.49■■□□□ 1.35
TRIM28-201ENST00000253024 PVALEFA0A1B0GWK0 134 aa23.49■■□□□ 1.35
TRIM28-201ENST00000253024 GLI1P08151 1106 aa23.49■■□□□ 1.35
TRIM28-201ENST00000253024 MYBP10242 640 aa23.49■■□□□ 1.35
TRIM28-201ENST00000253024 PAFAH1B1P43034 410 aa23.49■■□□□ 1.35
TRIM28-201ENST00000253024 CDC37Q16543 378 aaPredicted RBP23.49■■□□□ 1.35
TRIM28-201ENST00000253024 ARL8AQ96BM9 186 aa23.49■■□□□ 1.35
TRIM28-201ENST00000253024 DNAJC18Q9H819 358 aa23.49■■□□□ 1.35
TRIM28-201ENST00000253024 RRP15Q9Y3B9 282 aaKnown RBP23.49■■□□□ 1.35
TRIM28-201ENST00000253024 POLD1P28340 1107 aa23.49■■□□□ 1.35
TRIM28-201ENST00000253024 SLC9C1Q4G0N8 1177 aa23.49■■□□□ 1.35
TRIM28-201ENST00000253024 CCDC70Q6NSX1 233 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms