RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 CEP19Q96LK0 163 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 FAM161BQ96MY7 647 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 PPARGC1AQ9UBK2 798 aaKnown RBP11.28□□□□□ -0.6
VCL-201ENST00000211998 HAUS5O94927 633 aa11.27□□□□□ -0.6
VCL-201ENST00000211998 CCDC159P0C7I6 412 aa11.27□□□□□ -0.6
VCL-201ENST00000211998 P4HA1P13674 534 aa11.27□□□□□ -0.6
VCL-201ENST00000211998 GFAPP14136 432 aa11.27□□□□□ -0.6
VCL-201ENST00000211998 SERPINB3P29508 390 aa11.27□□□□□ -0.6
VCL-201ENST00000211998 SERPINB4P48594 390 aa11.27□□□□□ -0.6
VCL-201ENST00000211998 NSMFQ6X4W1 530 aa11.27□□□□□ -0.6
VCL-201ENST00000211998 ZNF513Q8N8E2 541 aaPredicted RBP11.27□□□□□ -0.6
VCL-201ENST00000211998 ICA1LQ8NDH6 482 aa11.27□□□□□ -0.6
VCL-201ENST00000211998 RIN2Q8WYP3 895 aaPredicted RBP11.27□□□□□ -0.6
VCL-201ENST00000211998 MAP4K1Q92918 833 aa11.27□□□□□ -0.6
VCL-201ENST00000211998 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.27□□□□□ -0.6
VCL-201ENST00000211998 DLGAP2Q9P1A6 1054 aa11.27□□□□□ -0.6
VCL-201ENST00000211998 WARS2Q9UGM6 360 aaKnown RBP11.27□□□□□ -0.6
VCL-201ENST00000211998 RWDD2AQ9UIY3 292 aa11.27□□□□□ -0.6
VCL-201ENST00000211998 ANO9A1A5B4 782 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 TARSL2A2RTX5 802 aaKnown RBP11.27□□□□□ -0.61
VCL-201ENST00000211998 ATP2B4P23634 1241 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 PLCB4Q15147 1175 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 LRRC31Q6UY01 552 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 ANO5Q75V66 913 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 NSMCE1Q8WV22 266 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 SLAIN2Q9P270 581 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 ADGRG1Q9Y653 693 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 GOLGA8QA0A0J9YX86 632 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 GOLGA8OA6NCC3 632 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 GOLGA8NF8WBI6 632 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 LMNB1P20700 586 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 ART3Q13508 389 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 DDX28Q9NUL7 540 aaKnown RBP11.27□□□□□ -0.61
VCL-201ENST00000211998 SLC5A4Q9NY91 659 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 BAG5Q9UL15 447 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 NEO1Q92859 1461 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 TOM1L1O75674 476 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 CFBP00751 764 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 ADAM9Q13443 819 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 CYLC2Q14093 348 aaPredicted RBP11.27□□□□□ -0.61
VCL-201ENST00000211998 E4F1Q66K89 784 aaPredicted RBP11.27□□□□□ -0.61
VCL-201ENST00000211998 GALNT17Q6IS24 598 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 MAEAQ7L5Y9 396 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 CCDC125Q86Z20 511 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 USP21Q9UK80 565 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 ZDHHC9Q9Y397 364 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 MAD1L1Q9Y6D9 718 aa11.27□□□□□ -0.61
VCL-201ENST00000211998 N4BP1O75113 896 aaKnown RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 PLS3P13797 630 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 PTGDRQ13258 359 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 EXOC3L4Q17RC7 722 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 ZNF658Q5TYW1 1059 aaPredicted RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 RFX8Q6ZV50 586 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 KIRREL3Q8IZU9 778 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 TGS1Q96RS0 853 aaKnown RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 DNAJC17Q9NVM6 304 aaKnown RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 SCHIP1Q9P0W5 487 aaPredicted RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 CAPN11Q9UMQ6 739 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 CFAP74Q9C0B2 1584 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 GNGT2O14610 69 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 S100BP04271 92 aaPredicted RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 CCZ1BP86790 482 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 CCZ1P86791 482 aaPredicted RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 TRIP13Q15645 432 aaPredicted RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 USH1GQ495M9 461 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 DHX40Q8IX18 779 aaKnown RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 DHTKD1Q96HY7 919 aaPredicted RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 CARD10Q9BWT7 1032 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 NOD2Q9HC29 1040 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 KRT82Q9NSB4 513 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 ABHD10Q9NUJ1 306 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 USP40Q9NVE5 1235 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 KDM5AP29375 1690 aaKnown RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 HSPA6P17066 643 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 TECP42680 631 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 CYP2J2P51589 502 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 MRPS15P82914 257 aaKnown RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 MDM2Q00987 491 aaPredicted RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 LRRC14Q15048 493 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 KRT31Q15323 416 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 LLGL1Q15334 1064 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 ZNF654Q8IZM8 581 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 CPXCR1Q8N123 301 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 DNAJC9Q8WXX5 260 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 P2RX5Q93086 422 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 KIF2CQ99661 725 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 OSBPL3Q9H4L5 887 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 HPCAL4Q9UM19 191 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 KAT6BQ8WYB5 2073 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 CCDC188H7C350 402 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 DDX39AO00148 427 aaKnown RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 PPIP5K2O43314 1243 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 PCP11498 1178 aaKnown RBP11.26□□□□□ -0.61
VCL-201ENST00000211998 PAX7P23759 505 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 PDE1BQ01064 536 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 CYB5D1Q6P9G0 228 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 SSH3Q8TE77 659 aa11.26□□□□□ -0.61
VCL-201ENST00000211998 H0YCG3 227 aa11.25□□□□□ -0.61
VCL-201ENST00000211998 WDR46O15213 610 aaKnown RBP11.25□□□□□ -0.61
VCL-201ENST00000211998 PHKG2P15735 406 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms