RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ADAM9Q13443 819 aa6.81□□□□□ -1.32
CD44-239ENST00000639002 EMC4Q5J8M3 183 aa6.81□□□□□ -1.32
CD44-239ENST00000639002 TTLL7Q6ZT98 887 aa6.81□□□□□ -1.32
CD44-239ENST00000639002 KCTD13Q8WZ19 329 aa6.81□□□□□ -1.32
CD44-239ENST00000639002 DDX1Q92499 740 aaKnown RBP6.81□□□□□ -1.32
CD44-239ENST00000639002 CHAMP1Q96JM3 812 aa6.81□□□□□ -1.32
CD44-239ENST00000639002 ARHGEF4Q9NR80 690 aa6.81□□□□□ -1.32
CD44-239ENST00000639002 CLDND1Q9NY35 253 aa6.81□□□□□ -1.32
CD44-239ENST00000639002 PPARGC1AQ9UBK2 798 aaKnown RBP6.81□□□□□ -1.32
CD44-239ENST00000639002 SMARCA5O60264 1052 aaPredicted RBP6.8□□□□□ -1.32
CD44-239ENST00000639002 NTRK3Q16288 839 aa6.8□□□□□ -1.32
CD44-239ENST00000639002 STEAP3Q658P3 488 aa6.8□□□□□ -1.32
CD44-239ENST00000639002 SGSM3Q96HU1 749 aa6.8□□□□□ -1.32
CD44-239ENST00000639002 BDH2Q9BUT1 245 aa6.8□□□□□ -1.32
CD44-239ENST00000639002 PCDH18Q9HCL0 1135 aa6.8□□□□□ -1.32
CD44-239ENST00000639002 USP40Q9NVE5 1235 aa6.8□□□□□ -1.32
CD44-239ENST00000639002 COA3Q9Y2R0 106 aaPredicted RBP6.8□□□□□ -1.32
CD44-239ENST00000639002 R3HCC1Q9Y3T6 440 aaKnown RBP6.8□□□□□ -1.32
CD44-239ENST00000639002 LRG1P02750 347 aa6.79□□□□□ -1.32
CD44-239ENST00000639002 RAB33AQ14088 237 aa6.79□□□□□ -1.32
CD44-239ENST00000639002 OSBP2Q969R2 916 aa6.79□□□□□ -1.32
CD44-239ENST00000639002 JAM3Q9BX67 310 aa6.79□□□□□ -1.32
CD44-239ENST00000639002 GPR27Q9NS67 375 aa6.79□□□□□ -1.32
CD44-239ENST00000639002 AGRPO00253 132 aa6.78□□□□□ -1.32
CD44-239ENST00000639002 CNR2P34972 360 aa6.78□□□□□ -1.32
CD44-239ENST00000639002 PLP2Q04941 152 aa6.78□□□□□ -1.32
CD44-239ENST00000639002 EFEMP1Q12805 493 aa6.78□□□□□ -1.32
CD44-239ENST00000639002 HSP90AA2PQ14568 343 aaPredicted RBP6.78□□□□□ -1.32
CD44-239ENST00000639002 UBXN11Q5T124 520 aa6.78□□□□□ -1.32
CD44-239ENST00000639002 KCNT2Q6UVM3 1135 aa6.78□□□□□ -1.32
CD44-239ENST00000639002 USP53Q70EK8 1073 aa6.78□□□□□ -1.32
CD44-239ENST00000639002 PRRT2Q7Z6L0 340 aaPredicted RBP6.78□□□□□ -1.32
CD44-239ENST00000639002 ZC3H18Q86VM9 953 aaKnown RBP6.78□□□□□ -1.32
CD44-239ENST00000639002 TTLL6Q8N841 843 aa6.78□□□□□ -1.32
CD44-239ENST00000639002 DTLQ9NZJ0 730 aa6.78□□□□□ -1.32
CD44-239ENST00000639002 PCDHB4Q9Y5E5 795 aa6.78□□□□□ -1.32
CD44-239ENST00000639002 PRODHO43272 600 aa6.77□□□□□ -1.33
CD44-239ENST00000639002 FGFR1P11362 822 aa6.77□□□□□ -1.33
CD44-239ENST00000639002 GJA9P57773 515 aa6.77□□□□□ -1.33
CD44-239ENST00000639002 YOD1Q5VVQ6 348 aaPredicted RBP6.77□□□□□ -1.33
CD44-239ENST00000639002 TEPPQ6URK8 271 aa6.77□□□□□ -1.33
CD44-239ENST00000639002 TOE1Q96GM8 510 aaKnown RBP6.77□□□□□ -1.33
CD44-239ENST00000639002 RBM15Q96T37 977 aaKnown RBP eCLIP6.77□□□□□ -1.33
CD44-239ENST00000639002 AARSD1Q9BTE6 412 aaKnown RBP6.77□□□□□ -1.33
CD44-239ENST00000639002 PHF20Q9BVI0 1012 aa6.77□□□□□ -1.33
CD44-239ENST00000639002 EPB41L1Q9H4G0 881 aa6.77□□□□□ -1.33
CD44-239ENST00000639002 BLACEA4D250 179 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 DDX3XO00571 662 aaKnown RBP eCLIP6.76□□□□□ -1.33
CD44-239ENST00000639002 DGKIO75912 1065 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 PABPC1P11940 636 aaKnown RBP6.76□□□□□ -1.33
CD44-239ENST00000639002 NKX3-2P78367 333 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 CHRNA2Q15822 529 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 RGL3Q3MIN7 710 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 MCTP2Q6DN12 878 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 RSPO2Q6UXX9 243 aaPredicted RBP6.76□□□□□ -1.33
CD44-239ENST00000639002 PROSER1Q86XN7 944 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 TXNDC5Q8NBS9 432 aaKnown RBP6.76□□□□□ -1.33
CD44-239ENST00000639002 ST13P5Q8NFI4 369 aaPredicted RBP6.76□□□□□ -1.33
CD44-239ENST00000639002 PIP4K2CQ8TBX8 421 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 CLEC4DQ8WXI8 215 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 SMOC1Q9H4F8 434 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 SLC6A20Q9NP91 592 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 NGRNQ9NPE2 291 aaKnown RBP6.76□□□□□ -1.33
CD44-239ENST00000639002 MYOTQ9UBF9 498 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 RBPJLQ9UBG7 517 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 ASH2LQ9UBL3 628 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 MSRB2Q9Y3D2 182 aa6.76□□□□□ -1.33
CD44-239ENST00000639002 MLLT6P55198 1093 aaPredicted RBP6.75□□□□□ -1.33
CD44-239ENST00000639002 FAM26FQ5R3K3 315 aa6.75□□□□□ -1.33
CD44-239ENST00000639002 LBX2Q6XYB7 198 aa6.75□□□□□ -1.33
CD44-239ENST00000639002 RBM12BQ8IXT5 1001 aaKnown RBP6.75□□□□□ -1.33
CD44-239ENST00000639002 HSPBP1Q9NZL4 362 aa6.75□□□□□ -1.33
CD44-239ENST00000639002 ASXL2Q76L83 1435 aa6.75□□□□□ -1.33
CD44-239ENST00000639002 SLC27A2O14975 620 aa6.74□□□□□ -1.33
CD44-239ENST00000639002 ZNF28P17035 718 aa6.74□□□□□ -1.33
CD44-239ENST00000639002 NSMFQ6X4W1 530 aa6.74□□□□□ -1.33
CD44-239ENST00000639002 SPATC1Q76KD6 591 aa6.74□□□□□ -1.33
CD44-239ENST00000639002 DCAF4Q8WV16 495 aa6.74□□□□□ -1.33
CD44-239ENST00000639002 ZSWIM3Q96MP5 696 aa6.74□□□□□ -1.33
CD44-239ENST00000639002 YIPF4Q9BSR8 244 aa6.74□□□□□ -1.33
CD44-239ENST00000639002 KRTAP4-5Q9BYR2 181 aa6.74□□□□□ -1.33
CD44-239ENST00000639002 IQCA1LA6NCM1 817 aa6.73□□□□□ -1.33
CD44-239ENST00000639002 ITGB3P05106 788 aa6.73□□□□□ -1.33
CD44-239ENST00000639002 COL6A2P12110 1019 aa6.73□□□□□ -1.33
CD44-239ENST00000639002 IL13P35225 146 aa6.73□□□□□ -1.33
CD44-239ENST00000639002 TBC1D10BQ4KMP7 808 aaPredicted RBP6.73□□□□□ -1.33
CD44-239ENST00000639002 NAALADL2Q58DX5 795 aa6.73□□□□□ -1.33
CD44-239ENST00000639002 HABP4Q5JVS0 413 aaKnown RBP6.73□□□□□ -1.33
CD44-239ENST00000639002 ERICH6BQ5W0A0 696 aa6.73□□□□□ -1.33
CD44-239ENST00000639002 STYK1Q6J9G0 422 aa6.73□□□□□ -1.33
CD44-239ENST00000639002 HHIPL2Q6UWX4 724 aa6.73□□□□□ -1.33
CD44-239ENST00000639002 OTOP3Q7RTS5 596 aa6.73□□□□□ -1.33
CD44-239ENST00000639002 GGNQ86UU5 652 aa6.73□□□□□ -1.33
CD44-239ENST00000639002 PHOSPHO1Q8TCT1 267 aa6.73□□□□□ -1.33
CD44-239ENST00000639002 JAG2Q9Y219 1238 aa6.73□□□□□ -1.33
CD44-239ENST00000639002 TELO2Q9Y4R8 837 aa6.73□□□□□ -1.33
CD44-239ENST00000639002 TRAV20A0A0B4J274 112 aa6.72□□□□□ -1.33
CD44-239ENST00000639002 MROH6A6NGR9 719 aa6.72□□□□□ -1.33
CD44-239ENST00000639002 E9PSI1 815 aa6.72□□□□□ -1.33
CD44-239ENST00000639002 ADCY3O60266 1144 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms