RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 ARMCX3Q9UH62 379 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 MAP3K19Q56UN5 1328 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 MED23Q9ULK4 1368 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 hCG_1984214I3L0E3 225 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 ZNF853P0CG23 659 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 MXD4Q14582 209 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 ARHGEF18Q6ZSZ5 1173 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 ACAP3Q96P50 834 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 SERPINB13Q9UIV8 391 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 ZHX2Q9Y6X8 837 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 SAMD9Q5K651 1589 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 USP17L12C9JPN9 530 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 USP17L21D6R901 530 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 ADCY8P40145 1251 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 JAK3P52333 1124 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 IL1RL1Q01638 556 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 SLC12A1Q13621 1099 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 BEND3Q5T5X7 828 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 FAM76AQ8TAV0 307 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 HEXIM2Q96MH2 286 aaKnown RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 VPS16Q9H269 839 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 MAGEF1Q9HAY2 307 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 MAN1C1Q9NR34 630 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 PALD1Q9ULE6 856 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 JRKLQ9Y4A0 524 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 ZMYND10O75800 440 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 HSPD1P10809 573 aaKnown RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 PDCD2Q16342 344 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 TBC1D10BQ4KMP7 808 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-217ENST00000637988 KAZNQ674X7 775 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 MIGA2Q7L4E1 593 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 CCDC127Q96BQ5 260 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 EPAS1Q99814 870 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 FSD1LQ9BXM9 530 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 STK17AQ9UEE5 414 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 FBXL21Q9UKT6 434 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 IPPQ9Y573 584 aa6.64□□□□□ -1.35
SCN1A-217ENST00000637988 MAP3K1Q13233 1512 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 RNF123Q5XPI4 1314 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 SGK1O00141 431 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 ALDH1A2O94788 518 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 OR52Z1P0C646 297 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 TAF1CQ15572 869 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-217ENST00000637988 CCDC186Q7Z3E2 898 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 RNF180Q86T96 592 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 STKLD1Q8NE28 680 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 NT5C1BQ96P26 610 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-217ENST00000637988 NEO1Q92859 1461 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 PRRG1O14668 218 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 ZNF263O14978 683 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 CREB3O43889 395 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 GYG1P46976 350 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 ABHD8Q96I13 439 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 IFIH1Q9BYX4 1025 aaKnown RBP6.63□□□□□ -1.35
SCN1A-217ENST00000637988 EFCC1Q9HA90 598 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 DPP7Q9UHL4 492 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 EFCAB6Q5THR3 1501 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 ATP10BO94823 1461 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 CPB1P15086 417 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 GNL1P36915 607 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-217ENST00000637988 ARHGDIAP52565 204 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 FCGRTP55899 365 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 B4GALNT4Q76KP1 1039 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 PGBD4Q96DM1 585 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 TRIM54Q9BYV2 358 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 TRPC7Q9HCX4 862 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 FEM1BQ9UK73 627 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 NR2E3Q9Y5X4 410 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 PRPSAP2O60256 369 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 PRMT3O60678 531 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 LDHAP00338 332 aaKnown RBP6.63□□□□□ -1.35
SCN1A-217ENST00000637988 HOXA7P31268 230 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-217ENST00000637988 KBTBD3Q8NAB2 608 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 FAM71BQ8TC56 605 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 MORC4Q8TE76 937 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 NR1H4Q96RI1 486 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-217ENST00000637988 SYTL2Q9HCH5 934 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 DACT1Q9NYF0 836 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 AKAP7Q9P0M2 348 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-217ENST00000637988 CCDC151A5D8V7 595 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 ASB14A6NK59 587 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 CPP00450 1065 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 LONRF2Q1L5Z9 754 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 KCTD1Q719H9 257 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 MLKLQ8NB16 471 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 PDCD6IPQ8WUM4 868 aaKnown RBP6.63□□□□□ -1.35
SCN1A-217ENST00000637988 Q9H521 79 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 MAPK8IP1Q9UQF2 711 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 AOX1Q06278 1338 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 USP17L5A8MUK1 530 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 EBAG9O00559 213 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 GPC4O75487 556 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 GCFC2P16383 781 aaKnown RBP6.63□□□□□ -1.35
SCN1A-217ENST00000637988 CUL1Q13616 776 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 HP1BP3Q5SSJ5 553 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-217ENST00000637988 TMTC1Q8IUR5 882 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 FBXL13Q8NEE6 735 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 CDC26Q8NHZ8 85 aa6.63□□□□□ -1.35
SCN1A-217ENST00000637988 LRRC37BQ96QE4 947 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms