RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 LY6KQ17RY6 165 aa19.22■□□□□ 0.67
CLN3-264ENST00000637985 DCAF4Q8WV16 495 aa19.22■□□□□ 0.67
CLN3-264ENST00000637985 IRF2BPLQ9H1B7 796 aa19.22■□□□□ 0.67
CLN3-264ENST00000637985 CD207Q9UJ71 328 aa19.22■□□□□ 0.67
CLN3-264ENST00000637985 C5orf67F2Z3F1 127 aa19.21■□□□□ 0.67
CLN3-264ENST00000637985 NMT2O60551 498 aa19.21■□□□□ 0.67
CLN3-264ENST00000637985 SLC3A2P08195 630 aaKnown RBP19.21■□□□□ 0.67
CLN3-264ENST00000637985 NOVP48745 357 aa19.21■□□□□ 0.67
CLN3-264ENST00000637985 ZNF200P98182 395 aaPredicted RBP19.21■□□□□ 0.67
CLN3-264ENST00000637985 CCDC96Q2M329 555 aa19.21■□□□□ 0.67
CLN3-264ENST00000637985 SYDE2Q5VT97 1194 aa19.21■□□□□ 0.67
CLN3-264ENST00000637985 KBTBD3Q8NAB2 608 aa19.21■□□□□ 0.67
CLN3-264ENST00000637985 ALG1Q9BT22 464 aa19.21■□□□□ 0.67
CLN3-264ENST00000637985 KATNAL1Q9BW62 490 aa19.21■□□□□ 0.67
CLN3-264ENST00000637985 LMAN2LQ9H0V9 348 aa19.21■□□□□ 0.67
CLN3-264ENST00000637985 RSPH10B2B2RC85 870 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 M0R2C6 588 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 RNF113AO15541 343 aaKnown RBP19.2■□□□□ 0.66
CLN3-264ENST00000637985 F2P00734 622 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 RB1P06400 928 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 RSPH10BP0C881 870 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 PPARAQ07869 468 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 HIC1Q14526 733 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 MFSD10Q14728 455 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 KIAA0753Q2KHM9 967 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 CHST3Q7LGC8 479 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 ATOH1Q92858 354 aaPredicted RBP19.2■□□□□ 0.66
CLN3-264ENST00000637985 PNMA2Q9UL42 364 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 MTMR7Q9Y216 660 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 TTC41PQ6P2S7 1318 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 PLXNA3P51805 1871 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 DMDP11532 3685 aa19.2■□□□□ 0.66
CLN3-264ENST00000637985 FAM186AA6NE01 2351 aa19.19■□□□□ 0.66
CLN3-264ENST00000637985 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.19■□□□□ 0.66
CLN3-264ENST00000637985 LOC730098B7Z3J9 87 aa19.19■□□□□ 0.66
CLN3-264ENST00000637985 PROB1E7EW31 1015 aa19.19■□□□□ 0.66
CLN3-264ENST00000637985 GRM6O15303 877 aa19.19■□□□□ 0.66
CLN3-264ENST00000637985 UPP2O95045 317 aa19.19■□□□□ 0.66
CLN3-264ENST00000637985 EYA4O95677 639 aa19.19■□□□□ 0.66
CLN3-264ENST00000637985 GTF2F1P35269 517 aaKnown RBP eCLIP19.19■□□□□ 0.66
CLN3-264ENST00000637985 VCPP55072 806 aaKnown RBP19.19■□□□□ 0.66
CLN3-264ENST00000637985 ADAM15Q13444 863 aa19.19■□□□□ 0.66
CLN3-264ENST00000637985 SEPT14Q6ZU15 432 aa19.19■□□□□ 0.66
CLN3-264ENST00000637985 SERINC5Q86VE9 423 aa19.19■□□□□ 0.66
CLN3-264ENST00000637985 EMID1Q96A84 441 aaPredicted RBP19.19■□□□□ 0.66
CLN3-264ENST00000637985 NACAP1Q9BZK3 213 aa19.19■□□□□ 0.66
CLN3-264ENST00000637985 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.19■□□□□ 0.66
CLN3-264ENST00000637985 TSPY2A6NKD2 308 aa19.18■□□□□ 0.66
CLN3-264ENST00000637985 LINC01565O15544 149 aa19.18■□□□□ 0.66
CLN3-264ENST00000637985 ZFYP08048 801 aaPredicted RBP19.18■□□□□ 0.66
CLN3-264ENST00000637985 LINC00271P0C7V0 271 aa19.18■□□□□ 0.66
CLN3-264ENST00000637985 CTNNB1P35222 781 aa19.18■□□□□ 0.66
CLN3-264ENST00000637985 THPOP40225 353 aa19.18■□□□□ 0.66
CLN3-264ENST00000637985 CBX2Q14781 532 aaPredicted RBP19.18■□□□□ 0.66
CLN3-264ENST00000637985 ERMP1Q7Z2K6 904 aa19.18■□□□□ 0.66
CLN3-264ENST00000637985 SEPT8Q92599 483 aa19.18■□□□□ 0.66
CLN3-264ENST00000637985 MSLNLQ96KJ4 702 aa19.18■□□□□ 0.66
CLN3-264ENST00000637985 C11orf84Q9BUA3 381 aaPredicted RBP19.18■□□□□ 0.66
CLN3-264ENST00000637985 KIAA1217Q5T5P2 1943 aa19.17■□□□□ 0.66
CLN3-264ENST00000637985 ZNF286BP0CG31 522 aa19.17■□□□□ 0.66
CLN3-264ENST00000637985 AVPR2P30518 371 aa19.17■□□□□ 0.66
CLN3-264ENST00000637985 BMPR1AP36894 532 aa19.17■□□□□ 0.66
CLN3-264ENST00000637985 SIGLEC14Q08ET2 396 aa19.17■□□□□ 0.66
CLN3-264ENST00000637985 FIBCD1Q8N539 461 aa19.17■□□□□ 0.66
CLN3-264ENST00000637985 RGS22Q8NE09 1264 aa19.17■□□□□ 0.66
CLN3-264ENST00000637985 ASIC4Q96FT7 647 aa19.17■□□□□ 0.66
CLN3-264ENST00000637985 IFIH1Q9BYX4 1025 aaKnown RBP19.17■□□□□ 0.66
CLN3-264ENST00000637985 IGFLR1Q9H665 355 aa19.17■□□□□ 0.66
CLN3-264ENST00000637985 DDX41Q9UJV9 622 aaKnown RBP19.17■□□□□ 0.66
CLN3-264ENST00000637985 WDR19Q8NEZ3 1342 aa19.17■□□□□ 0.66
CLN3-264ENST00000637985 TSHZ3Q63HK5 1081 aa19.16■□□□□ 0.66
CLN3-264ENST00000637985 DHX37Q8IY37 1157 aaKnown RBP19.16■□□□□ 0.66
CLN3-264ENST00000637985 PPTC7Q8NI37 304 aa19.16■□□□□ 0.66
CLN3-264ENST00000637985 IL17RAQ96F46 866 aa19.16■□□□□ 0.66
CLN3-264ENST00000637985 OSBPL7Q9BZF2 842 aa19.16■□□□□ 0.66
CLN3-264ENST00000637985 NAPBQ9H115 298 aa19.16■□□□□ 0.66
CLN3-264ENST00000637985 GPCPD1Q9NPB8 672 aa19.16■□□□□ 0.66
CLN3-264ENST00000637985 INCENPQ9NQS7 918 aa19.16■□□□□ 0.66
CLN3-264ENST00000637985 FRMPD2Q68DX3 1309 aaPredicted RBP19.16■□□□□ 0.66
CLN3-264ENST00000637985 HOXD8P13378 290 aaPredicted RBP19.15■□□□□ 0.66
CLN3-264ENST00000637985 AAMPQ13685 434 aa19.15■□□□□ 0.66
CLN3-264ENST00000637985 LAMC2Q13753 1193 aa19.15■□□□□ 0.66
CLN3-264ENST00000637985 ASCL5Q7RTU5 278 aa19.15■□□□□ 0.66
CLN3-264ENST00000637985 YTHDC1Q96MU7 727 aaKnown RBP19.15■□□□□ 0.66
CLN3-264ENST00000637985 FSD1Q9BTV5 496 aa19.15■□□□□ 0.66
CLN3-264ENST00000637985 RWDD3Q9Y3V2 267 aa19.15■□□□□ 0.66
CLN3-264ENST00000637985 VPS13AQ96RL7 3174 aa19.14■□□□□ 0.66
CLN3-264ENST00000637985 H0Y858 1186 aa19.14■□□□□ 0.65
CLN3-264ENST00000637985 NUBP1P53384 320 aa19.14■□□□□ 0.65
CLN3-264ENST00000637985 CAMK1Q14012 370 aa19.14■□□□□ 0.65
CLN3-264ENST00000637985 STXBP2Q15833 593 aa19.14■□□□□ 0.65
CLN3-264ENST00000637985 SMRP1Q8NCR6 262 aa19.14■□□□□ 0.65
CLN3-264ENST00000637985 PI4K2BQ8TCG2 481 aa19.14■□□□□ 0.65
CLN3-264ENST00000637985 NSUN6Q8TEA1 469 aaKnown RBP19.14■□□□□ 0.65
CLN3-264ENST00000637985 CLP1Q92989 425 aaKnown RBP19.14■□□□□ 0.65
CLN3-264ENST00000637985 MAF1Q9H063 256 aa19.14■□□□□ 0.65
CLN3-264ENST00000637985 TLR9Q9NR96 1032 aa19.14■□□□□ 0.65
CLN3-264ENST00000637985 CLEC1BQ9P126 229 aa19.14■□□□□ 0.65
CLN3-264ENST00000637985 ZBTB47Q9UFB7 747 aaPredicted RBP19.14■□□□□ 0.65
CLN3-264ENST00000637985 MYH7BA7E2Y1 1941 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms