RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 GTF2A2P52657 109 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 NOGQ13253 232 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 TRIM14Q14142 442 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 CDC37Q16543 378 aaPredicted RBP20.56■□□□□ 0.88
CLN3-263ENST00000637871 NELFBQ8WX92 580 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 STAMQ92783 540 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 CCDC51Q96ER9 411 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 CDK5RAP3Q96JB5 506 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 PTPN18Q99952 460 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 NAA15Q9BXJ9 866 aaKnown RBP20.56■□□□□ 0.88
CLN3-263ENST00000637871 THAP9Q9H5L6 903 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 INTS13Q9NVM9 706 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 CTNND2Q9UQB3 1225 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 PCDHA1Q9Y5I3 950 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.56■□□□□ 0.88
CLN3-263ENST00000637871 ZSCAN12O43309 604 aa20.55■□□□□ 0.88
CLN3-263ENST00000637871 KLRC4O43908 158 aa20.55■□□□□ 0.88
CLN3-263ENST00000637871 BMP3P12645 472 aa20.55■□□□□ 0.88
CLN3-263ENST00000637871 CASP1P29466 404 aa20.55■□□□□ 0.88
CLN3-263ENST00000637871 CDC25AP30304 524 aa20.55■□□□□ 0.88
CLN3-263ENST00000637871 TXKP42681 527 aa20.55■□□□□ 0.88
CLN3-263ENST00000637871 KMT5BQ4FZB7 885 aa20.55■□□□□ 0.88
CLN3-263ENST00000637871 SYDE2Q5VT97 1194 aa20.55■□□□□ 0.88
CLN3-263ENST00000637871 MTERF4Q7Z6M4 381 aaKnown RBP20.55■□□□□ 0.88
CLN3-263ENST00000637871 POTEDQ86YR6 584 aa20.55■□□□□ 0.88
CLN3-263ENST00000637871 TRIM9Q9C026 710 aa20.55■□□□□ 0.88
CLN3-263ENST00000637871 SH2D4AQ9H788 454 aa20.55■□□□□ 0.88
CLN3-263ENST00000637871 VCPKMTQ9H867 229 aa20.55■□□□□ 0.88
CLN3-263ENST00000637871 DDX25Q9UHL0 483 aaKnown RBP20.55■□□□□ 0.88
CLN3-263ENST00000637871 KDM3AQ9Y4C1 1321 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 IGF2BP3O00425 579 aaKnown RBP eCLIP20.54■□□□□ 0.88
CLN3-263ENST00000637871 TBX3O15119 743 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 PLA2G6O60733 806 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 NDUFB10O96000 172 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 CETPP11597 493 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 VCAM1P19320 739 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 SLC16A2P36021 539 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 CEP135Q66GS9 1140 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 FOXR2Q6PJQ5 311 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 APTXQ7Z2E3 356 aaKnown RBP20.54■□□□□ 0.88
CLN3-263ENST00000637871 PPFIBP1Q86W92 1011 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 FBXO11Q86XK2 927 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 MBOAT7Q96N66 472 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 PANX2Q96RD6 677 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 NT5C3AQ9H0P0 336 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 EXOC1Q9NV70 894 aa20.54■□□□□ 0.88
CLN3-263ENST00000637871 PP2D1A8MPX8 630 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 BTBD19C9JJ37 291 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 EEF1GP26641 437 aaKnown RBP20.53■□□□□ 0.88
CLN3-263ENST00000637871 PRCPP42785 496 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 PSMD2Q13200 908 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 SH3D19Q5HYK7 790 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 GPAT2Q6NUI2 795 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 FAM114A1Q8IWE2 563 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 SLFN12Q8IYM2 578 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 KCTD17Q8N5Z5 321 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 DNAJC5GQ8N7S2 189 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 C16orf45Q96MC5 204 aaPredicted RBP20.53■□□□□ 0.88
CLN3-263ENST00000637871 MMTAG2Q9BU76 263 aaKnown RBP20.53■□□□□ 0.88
CLN3-263ENST00000637871 GOPCQ9HD26 462 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 TMOD4Q9NZQ9 345 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 MANSC4A6NHS7 340 aaPredicted RBP20.53■□□□□ 0.88
CLN3-263ENST00000637871 TMEM232C9JQI7 657 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 MARCH6O60337 910 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 PBX1P40424 430 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 STX17P56962 302 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 HYIQ5T013 277 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 MAP7D2Q96T17 732 aa20.53■□□□□ 0.88
CLN3-263ENST00000637871 C19orf81C9J6K1 198 aa20.52■□□□□ 0.88
CLN3-263ENST00000637871 AKR1B15C9JRZ8 316 aaPredicted RBP20.52■□□□□ 0.88
CLN3-263ENST00000637871 USP14P54578 494 aa20.52■□□□□ 0.88
CLN3-263ENST00000637871 TCP11X2Q5H9J9 407 aa20.52■□□□□ 0.88
CLN3-263ENST00000637871 FAM83BQ5T0W9 1011 aa20.52■□□□□ 0.88
CLN3-263ENST00000637871 E4F1Q66K89 784 aaPredicted RBP20.52■□□□□ 0.88
CLN3-263ENST00000637871 KIF18AQ8NI77 898 aa20.52■□□□□ 0.88
CLN3-263ENST00000637871 BAG1Q99933 345 aaPredicted RBP20.52■□□□□ 0.88
CLN3-263ENST00000637871 EDIL3O43854 480 aa20.51■□□□□ 0.87
CLN3-263ENST00000637871 TDP2O95551 362 aa20.51■□□□□ 0.87
CLN3-263ENST00000637871 CCNE1P24864 410 aa20.51■□□□□ 0.87
CLN3-263ENST00000637871 SYCP1Q15431 976 aa20.51■□□□□ 0.87
CLN3-263ENST00000637871 SAMD1Q6SPF0 538 aaPredicted RBP20.51■□□□□ 0.87
CLN3-263ENST00000637871 CNGA4Q8IV77 575 aa20.51■□□□□ 0.87
CLN3-263ENST00000637871 CHURC1Q8WUH1 139 aa20.51■□□□□ 0.87
CLN3-263ENST00000637871 LARP4BQ92615 738 aaKnown RBP20.51■□□□□ 0.87
CLN3-263ENST00000637871 C12orf42Q96LP6 360 aa20.51■□□□□ 0.87
CLN3-263ENST00000637871 ANO3Q9BYT9 981 aa20.51■□□□□ 0.87
CLN3-263ENST00000637871 RPAP3Q9H6T3 665 aaPredicted RBP20.51■□□□□ 0.87
CLN3-263ENST00000637871 MAGEC2Q9UBF1 373 aaPredicted RBP20.51■□□□□ 0.87
CLN3-263ENST00000637871 PCDHA12Q9UN75 941 aa20.51■□□□□ 0.87
CLN3-263ENST00000637871 TESPA1A2RU30 521 aaPredicted RBP20.5■□□□□ 0.87
CLN3-263ENST00000637871 SLC37A4O43826 429 aa20.5■□□□□ 0.87
CLN3-263ENST00000637871 FGFR1OPO95684 399 aaKnown RBP20.5■□□□□ 0.87
CLN3-263ENST00000637871 ASIC1P78348 528 aa20.5■□□□□ 0.87
CLN3-263ENST00000637871 GRB10Q13322 594 aa20.5■□□□□ 0.87
CLN3-263ENST00000637871 UBE2SQ16763 222 aa20.5■□□□□ 0.87
CLN3-263ENST00000637871 TMEM119Q4V9L6 283 aa20.5■□□□□ 0.87
CLN3-263ENST00000637871 UNC13DQ70J99 1090 aa20.5■□□□□ 0.87
CLN3-263ENST00000637871 SMYD4Q8IYR2 804 aaPredicted RBP20.5■□□□□ 0.87
CLN3-263ENST00000637871 PROCA1Q8NCQ7 364 aaPredicted RBP20.5■□□□□ 0.87
CLN3-263ENST00000637871 TANGO6Q9C0B7 1094 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms