RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 KCNH4Q9UQ05 1017 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 COPG1Q9Y678 874 aaKnown RBP6□□□□□ -1.45
SCN1A-209ENST00000635750 KDM5BQ9UGL1 1544 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 KDM2BQ8NHM5 1336 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 PRPF4O43172 522 aaKnown RBP eCLIP6□□□□□ -1.45
SCN1A-209ENST00000635750 MAPK4P31152 587 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 ATICP31939 592 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 GUCY2FP51841 1108 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 TIMM10P62072 90 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 TFAMQ00059 246 aaKnown RBP6□□□□□ -1.45
SCN1A-209ENST00000635750 CC2D1AQ6P1N0 951 aaPredicted RBP6□□□□□ -1.45
SCN1A-209ENST00000635750 LRRC31Q6UY01 552 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 OR9Q1Q8NGQ5 310 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 FSD1LQ9BXM9 530 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 TRIM54Q9BYV2 358 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 PTPN22Q9Y2R2 807 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 SCINQ9Y6U3 715 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 E5RI56 91 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 GAP43P17677 238 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 CAPZA2P47755 286 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 NSUN2Q08J23 767 aaKnown RBP eCLIP6□□□□□ -1.45
SCN1A-209ENST00000635750 KCNA1Q09470 495 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 ACCSLQ4AC99 568 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 SMAP1Q8IYB5 467 aaPredicted RBP6□□□□□ -1.45
SCN1A-209ENST00000635750 PGBD3Q8N328 593 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 SLC26A7Q8TE54 656 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 ACCSQ96QU6 501 aa6□□□□□ -1.45
SCN1A-209ENST00000635750 SRPRBQ9Y5M8 271 aaKnown RBP6□□□□□ -1.45
SCN1A-209ENST00000635750 KIF28PB7ZC32 967 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 ARHGEF9O43307 516 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 PRDM1O75626 825 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 SUN1O94901 812 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 SERPINB2P05120 415 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 HSPA1AP0DMV8 641 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 HSPA1BP0DMV9 641 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 RPS8P62241 208 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 GCKRQ14397 625 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 DOK7Q18PE1 504 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 NEK8Q86SG6 692 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 BLIDQ8IZY5 108 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 TAGAPQ8N103 731 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 IP6K1Q92551 441 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 NAF1Q96HR8 494 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 TACO1Q9BSH4 297 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 SLC8A1P32418 973 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 STAT2P52630 851 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 TAF1BQ53T94 588 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 KRT27Q7Z3Y8 459 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 MRPL50Q8N5N7 158 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 TEX9Q8N6V9 391 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 FOPNLQ96NB1 174 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 SENP1Q9P0U3 644 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 VPS54Q9P1Q0 977 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 PLB1Q6P1J6 1458 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 ARHGAP10A1A4S6 786 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 KCNJ18B7U540 433 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 PPEF1O14829 653 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 SLC27A2O14975 620 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 SERPINI2O75830 405 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 HSPD1P10809 573 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 MAP3K10Q02779 954 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 SF3A3Q12874 501 aaKnown RBP eCLIP5.99□□□□□ -1.452e-17■■■■■ 37.8
SCN1A-209ENST00000635750 KCNJ12Q14500 433 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 EXOC3L4Q17RC7 722 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 FAM47AQ5JRC9 791 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 LRRC47Q8N1G4 583 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 NLGN1Q8N2Q7 840 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 PDCD6IPQ8WUM4 868 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 BTN2A2Q8WVV5 523 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 PHKBQ93100 1093 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 ZSCAN10Q96SZ4 725 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 COPRSQ9NQ92 184 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 WDR97A6NE52 1622 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 UHRF1BP1Q6BDS2 1440 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 PYGBP11216 843 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 PCP11498 1178 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 TCF3P15923 654 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 RXRBP28702 533 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 SCNN1DP51172 638 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 PPARAQ07869 468 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 RC3H1Q5TC82 1133 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 RASIP1Q5U651 963 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 MMS22LQ6ZRQ5 1243 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 ZNF713Q8N859 430 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 HEXIM2Q96MH2 286 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 NDEL1Q9GZM8 345 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 TMEM206Q9H813 350 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 C14orf93Q9H972 538 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 NPATQ14207 1427 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 PHLPP2Q6ZVD8 1323 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 POTEB3A0JP26 581 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 E2F6O75461 281 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 OR52Z1P0C646 297 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 PSMC2P35998 433 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 CTSWP56202 376 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 RAD51Q06609 339 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 CUL1Q13616 776 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 MORC3Q14149 939 aa5.99□□□□□ -1.45
SCN1A-209ENST00000635750 EIF4A2Q14240 407 aaKnown RBP5.99□□□□□ -1.45
SCN1A-209ENST00000635750 AARS2Q5JTZ9 985 aaKnown RBP5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms