RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 XRRA1Q6P2D8 792 aa17.04■□□□□ 0.32
LINC00643-206ENST00000623985 PSRC1Q6PGN9 363 aaPredicted RBP17.04■□□□□ 0.32
LINC00643-206ENST00000623985 Q6ZUG5 572 aa17.04■□□□□ 0.32
LINC00643-206ENST00000623985 HEATR3Q7Z4Q2 680 aa17.04■□□□□ 0.32
LINC00643-206ENST00000623985 TEX2Q8IWB9 1127 aa17.04■□□□□ 0.32
LINC00643-206ENST00000623985 FBXL16Q8N461 479 aa17.04■□□□□ 0.32
LINC00643-206ENST00000623985 ZNF713Q8N859 430 aaPredicted RBP17.04■□□□□ 0.32
LINC00643-206ENST00000623985 GPKOWQ92917 476 aaPredicted RBP eCLIP17.04■□□□□ 0.32
LINC00643-206ENST00000623985 UMODL1Q5DID0 1318 aa17.03■□□□□ 0.32
LINC00643-206ENST00000623985 FIBPO43427 364 aa17.03■□□□□ 0.32
LINC00643-206ENST00000623985 CPA1P15085 419 aa17.03■□□□□ 0.32
LINC00643-206ENST00000623985 RPS6KB1P23443 525 aa17.03■□□□□ 0.32
LINC00643-206ENST00000623985 ICAM3P32942 547 aa17.03■□□□□ 0.32
LINC00643-206ENST00000623985 METAP2P50579 478 aaKnown RBP eCLIP17.03■□□□□ 0.32
LINC00643-206ENST00000623985 SMAD3P84022 425 aaKnown RBP17.03■□□□□ 0.32
LINC00643-206ENST00000623985 MYSM1Q5VVJ2 828 aa17.03■□□□□ 0.32
LINC00643-206ENST00000623985 WWC2Q6AWC2 1192 aa17.03■□□□□ 0.32
LINC00643-206ENST00000623985 FAM109BQ6ICB4 259 aaPredicted RBP17.03■□□□□ 0.32
LINC00643-206ENST00000623985 SESTD1Q86VW0 696 aa17.03■□□□□ 0.32
LINC00643-206ENST00000623985 DEFB123Q8N688 67 aa17.03■□□□□ 0.32
LINC00643-206ENST00000623985 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.03■□□□□ 0.32
LINC00643-206ENST00000623985 AGXT2Q9BYV1 514 aa17.03■□□□□ 0.32
LINC00643-206ENST00000623985 WNT8AQ9H1J5 351 aa17.03■□□□□ 0.32
LINC00643-206ENST00000623985 IL23AQ9NPF7 189 aa17.03■□□□□ 0.32
LINC00643-206ENST00000623985 CCDC196A0A1B0GTZ2 297 aa17.02■□□□□ 0.32
LINC00643-206ENST00000623985 CDC27P30260 824 aa17.02■□□□□ 0.32
LINC00643-206ENST00000623985 SP2Q02086 613 aa17.02■□□□□ 0.32
LINC00643-206ENST00000623985 APOBRQ0VD83 1088 aa17.02■□□□□ 0.32
LINC00643-206ENST00000623985 HSDL1Q3SXM5 330 aa17.02■□□□□ 0.32
LINC00643-206ENST00000623985 KAT2BQ92831 832 aa17.02■□□□□ 0.32
LINC00643-206ENST00000623985 BRF1Q92994 677 aa17.02■□□□□ 0.32
LINC00643-206ENST00000623985 ZFP91Q96JP5 570 aaPredicted RBP17.02■□□□□ 0.32
LINC00643-206ENST00000623985 SPATA33Q96N06 139 aa17.02■□□□□ 0.32
LINC00643-206ENST00000623985 EHMT1Q9H9B1 1298 aa17.02■□□□□ 0.32
LINC00643-206ENST00000623985 NAP1L2Q9ULW6 460 aaPredicted RBP17.02■□□□□ 0.32
LINC00643-206ENST00000623985 CHD9Q3L8U1 2897 aa17.02■□□□□ 0.31
LINC00643-206ENST00000623985 SPDYE3A6NKU9 549 aa17.01■□□□□ 0.31
LINC00643-206ENST00000623985 PITPNM1O00562 1244 aa17.01■□□□□ 0.31
LINC00643-206ENST00000623985 ZNF286BP0CG31 522 aa17.01■□□□□ 0.31
LINC00643-206ENST00000623985 CYP2C9P11712 490 aa17.01■□□□□ 0.31
LINC00643-206ENST00000623985 NAPAP54920 295 aa17.01■□□□□ 0.31
LINC00643-206ENST00000623985 SEMA3FQ13275 785 aa17.01■□□□□ 0.31
LINC00643-206ENST00000623985 NEDD9Q14511 834 aa17.01■□□□□ 0.31
LINC00643-206ENST00000623985 UBE2SQ16763 222 aa17.01■□□□□ 0.31
LINC00643-206ENST00000623985 TMEM240Q5SV17 173 aa17.01■□□□□ 0.31
LINC00643-206ENST00000623985 Q7L0L9 218 aa17.01■□□□□ 0.31
LINC00643-206ENST00000623985 MLXIPQ9HAP2 919 aa17.01■□□□□ 0.31
LINC00643-206ENST00000623985 FAM217BQ9NTX9 383 aaPredicted RBP17.01■□□□□ 0.31
LINC00643-206ENST00000623985 NOD1Q9Y239 953 aa17.01■□□□□ 0.31
LINC00643-206ENST00000623985 SPATA31C2B4DYI2 1134 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 HAS3O00219 553 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 SORBS3O60504 671 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 PPFIA4O75335 1185 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 PSEN2P49810 448 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 CCL23P55773 120 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 CHMP4BP1P59074 171 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 MFSD10Q14728 455 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 ZNF697Q5TEC3 545 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 RASIP1Q5U651 963 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 METTL7BQ6UX53 244 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 C16orf59Q7L2K0 433 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 NLRX1Q86UT6 975 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 PPP1R13LQ8WUF5 828 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 MTIF3Q9H2K0 278 aaKnown RBP17■□□□□ 0.31
LINC00643-206ENST00000623985 BARHL2Q9NY43 387 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 RTEL1Q9NZ71 1219 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 GTF2IRD1Q9UHL9 959 aa17■□□□□ 0.31
LINC00643-206ENST00000623985 STXBP3O00186 592 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 NOP56O00567 594 aaKnown RBP16.99■□□□□ 0.31
LINC00643-206ENST00000623985 PFKMP08237 780 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 ACRP10323 421 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 ADCY7P51828 1080 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 BFSP2Q13515 415 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 PTGISQ16647 500 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 KIAA0753Q2KHM9 967 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 GDF6Q6KF10 455 aaPredicted RBP16.99■□□□□ 0.31
LINC00643-206ENST00000623985 TYW1BQ6NUM6 668 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 ZNF365Q70YC5 407 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 RUFY3Q7L099 469 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 CCDC155Q8N6L0 562 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 GPRASP2Q96D09 838 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 CDHR1Q96JP9 859 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 SENP7Q9BQF6 1050 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 USP26Q9BXU7 913 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 GLT8D2Q9H1C3 349 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 RIC8AQ9NPQ8 531 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 MTMR10Q9NXD2 777 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 PCDHA6Q9UN73 950 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 PCDHA8Q9Y5H6 950 aa16.99■□□□□ 0.31
LINC00643-206ENST00000623985 V9GY48 417 aaPredicted RBP16.99■□□□□ 0.31
LINC00643-206ENST00000623985 TMEM265A0A087WTH1 108 aa16.98■□□□□ 0.31
LINC00643-206ENST00000623985 RFC2P35250 354 aa16.98■□□□□ 0.31
LINC00643-206ENST00000623985 ADD1P35611 737 aaKnown RBP16.98■□□□□ 0.31
LINC00643-206ENST00000623985 PFKFB3Q16875 520 aaPredicted RBP16.98■□□□□ 0.31
LINC00643-206ENST00000623985 RPUSD2Q8IZ73 545 aaKnown RBP16.98■□□□□ 0.31
LINC00643-206ENST00000623985 C7orf31Q8N865 590 aa16.98■□□□□ 0.31
LINC00643-206ENST00000623985 GIMAP8Q8ND71 665 aaPredicted RBP16.98■□□□□ 0.31
LINC00643-206ENST00000623985 CAGE1Q8TC20 777 aa16.98■□□□□ 0.31
LINC00643-206ENST00000623985 HERVK_113Q902F9 699 aa16.98■□□□□ 0.31
LINC00643-206ENST00000623985 SCLYQ96I15 445 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms