RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 AGGF1Q8N302 714 aaeCLIP9.65□□□□□ -0.87
VCL-206ENST00000623461 IL17RAQ96F46 866 aa9.65□□□□□ -0.87
VCL-206ENST00000623461 CARD10Q9BWT7 1032 aa9.65□□□□□ -0.87
VCL-206ENST00000623461 SLC40A1Q9NP59 571 aa9.65□□□□□ -0.87
VCL-206ENST00000623461 NCOA3Q9Y6Q9 1424 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 OCA2Q04671 838 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 AGBL2Q5U5Z8 902 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 ANO5Q75V66 913 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 SLITRK6Q9H5Y7 841 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 ETNK1Q9HBU6 452 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 COPRSQ9NQ92 184 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 FAM187AA6NFU0 413 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 CCNI2Q6ZMN8 369 aaPredicted RBP9.64□□□□□ -0.87
VCL-206ENST00000623461 CNPY4Q8N129 248 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 FAM81BQ96LP2 452 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 NBPF3Q9H094 633 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 NDST4Q9H3R1 872 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 GPCPD1Q9NPB8 672 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 SOS2Q07890 1332 aaPredicted RBP9.64□□□□□ -0.87
VCL-206ENST00000623461 BPIFB4P59827 614 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 PI4K2BQ8TCG2 481 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 USP40Q9NVE5 1235 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 FHOD1Q9Y613 1164 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 H0Y3Z8 333 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 EXOC5O00471 708 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 CYP27A1Q02318 531 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 UBE3CQ15386 1083 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 GSPT2Q8IYD1 628 aaKnown RBP9.64□□□□□ -0.87
VCL-206ENST00000623461 AP1M1Q9BXS5 423 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 IQANK1A0A1B0GTG1 560 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 MDM2Q00987 491 aaPredicted RBP9.64□□□□□ -0.87
VCL-206ENST00000623461 GRAMD1CQ8IYS0 662 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 NDE1Q9NXR1 346 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 ARL2BPQ9Y2Y0 163 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 PRDM15P57071 1507 aaPredicted RBP9.64□□□□□ -0.87
VCL-206ENST00000623461 ENO4A6NNW6 628 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 MCF2P10911 925 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 CAPN12Q6ZSI9 719 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 CCDC138Q96M89 665 aa9.64□□□□□ -0.87
VCL-206ENST00000623461 CPSF1Q10570 1443 aaKnown RBP9.64□□□□□ -0.87
VCL-206ENST00000623461 TTI1O43156 1089 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 PALMO75781 387 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 HAUS5O94927 633 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 CA4P22748 312 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 GUCY1A3Q02108 690 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 PICALMQ13492 652 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 TMCO4Q5TGY1 634 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 ARL6IP4Q66PJ3 421 aaKnown RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 LRRC31Q6UY01 552 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 MRPL40Q9NQ50 206 aaKnown RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 PCDHA12Q9UN75 941 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 PARP3Q9Y6F1 533 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 SYNGAP1Q96PV0 1343 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 DAPK3O43293 454 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 PRPF6O94906 941 aaKnown RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 IFNAR1P17181 557 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 MFAP3P55082 362 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 RASGRP2Q7LDG7 609 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 ZNF589Q86UQ0 364 aaPredicted RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 RHOT2Q8IXI1 618 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 A0A1W2PQC6 194 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 MIF4GDA9UHW6 222 aaKnown RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 MYO1FO00160 1098 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 DIAPH2O60879 1101 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 ATF7P17544 494 aaPredicted RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 HDLBPQ00341 1268 aaKnown RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 TOB2Q14106 344 aaPredicted RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 AOC3Q16853 763 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 EPM2AIP1Q7L775 607 aaPredicted RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 LARP4BQ92615 738 aaKnown RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 AZI2Q9H6S1 392 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 LSP1P33241 339 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 YWHAGP61981 247 aaKnown RBP eCLIP9.63□□□□□ -0.87
VCL-206ENST00000623461 MYL7Q01449 175 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 BYSLQ13895 437 aaKnown RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 PPWD1Q96BP3 646 aaKnown RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 SEC16BQ96JE7 1060 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 ZNF594Q96JF6 807 aaPredicted RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 KIFC3Q9BVG8 833 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 MRPL46Q9H2W6 279 aaKnown RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 INTUQ9ULD6 942 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 TNKSO95271 1327 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 TET3O43151 1660 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 hCG_1642624A0A1W2PR95 340 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 ACTN1P12814 892 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 CDAN1Q8IWY9 1227 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 FAM133AQ8N9E0 248 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 TRIM15Q9C019 465 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 ANLNQ9NQW6 1124 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 CEP72Q9P209 647 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 FAM107AO95990 144 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 PTPREP23469 700 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 DDIT3P35638 169 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 RSBN1LQ6PCB5 846 aaPredicted RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 NBPF5PQ86XG9 351 aaPredicted RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 MCF2L2Q86YR7 1114 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 CATSPER1Q8NEC5 780 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 USP6NLQ92738 828 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 TTC25Q96NG3 672 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 PCDHA4Q9UN74 947 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms