RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 XRRA1Q6P2D8 792 aa17.04■□□□□ 0.32
LINC00643-205ENST00000623219 PSRC1Q6PGN9 363 aaPredicted RBP17.04■□□□□ 0.32
LINC00643-205ENST00000623219 Q6ZUG5 572 aa17.04■□□□□ 0.32
LINC00643-205ENST00000623219 HEATR3Q7Z4Q2 680 aa17.04■□□□□ 0.32
LINC00643-205ENST00000623219 TEX2Q8IWB9 1127 aa17.04■□□□□ 0.32
LINC00643-205ENST00000623219 FBXL16Q8N461 479 aa17.04■□□□□ 0.32
LINC00643-205ENST00000623219 ZNF713Q8N859 430 aaPredicted RBP17.04■□□□□ 0.32
LINC00643-205ENST00000623219 GPKOWQ92917 476 aaPredicted RBP eCLIP17.04■□□□□ 0.32
LINC00643-205ENST00000623219 UMODL1Q5DID0 1318 aa17.03■□□□□ 0.32
LINC00643-205ENST00000623219 FIBPO43427 364 aa17.03■□□□□ 0.32
LINC00643-205ENST00000623219 CPA1P15085 419 aa17.03■□□□□ 0.32
LINC00643-205ENST00000623219 RPS6KB1P23443 525 aa17.03■□□□□ 0.32
LINC00643-205ENST00000623219 ICAM3P32942 547 aa17.03■□□□□ 0.32
LINC00643-205ENST00000623219 METAP2P50579 478 aaKnown RBP eCLIP17.03■□□□□ 0.32
LINC00643-205ENST00000623219 SMAD3P84022 425 aaKnown RBP17.03■□□□□ 0.32
LINC00643-205ENST00000623219 MYSM1Q5VVJ2 828 aa17.03■□□□□ 0.32
LINC00643-205ENST00000623219 WWC2Q6AWC2 1192 aa17.03■□□□□ 0.32
LINC00643-205ENST00000623219 FAM109BQ6ICB4 259 aaPredicted RBP17.03■□□□□ 0.32
LINC00643-205ENST00000623219 SESTD1Q86VW0 696 aa17.03■□□□□ 0.32
LINC00643-205ENST00000623219 DEFB123Q8N688 67 aa17.03■□□□□ 0.32
LINC00643-205ENST00000623219 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.03■□□□□ 0.32
LINC00643-205ENST00000623219 AGXT2Q9BYV1 514 aa17.03■□□□□ 0.32
LINC00643-205ENST00000623219 WNT8AQ9H1J5 351 aa17.03■□□□□ 0.32
LINC00643-205ENST00000623219 IL23AQ9NPF7 189 aa17.03■□□□□ 0.32
LINC00643-205ENST00000623219 CCDC196A0A1B0GTZ2 297 aa17.02■□□□□ 0.32
LINC00643-205ENST00000623219 CDC27P30260 824 aa17.02■□□□□ 0.32
LINC00643-205ENST00000623219 SP2Q02086 613 aa17.02■□□□□ 0.32
LINC00643-205ENST00000623219 APOBRQ0VD83 1088 aa17.02■□□□□ 0.32
LINC00643-205ENST00000623219 HSDL1Q3SXM5 330 aa17.02■□□□□ 0.32
LINC00643-205ENST00000623219 KAT2BQ92831 832 aa17.02■□□□□ 0.32
LINC00643-205ENST00000623219 BRF1Q92994 677 aa17.02■□□□□ 0.32
LINC00643-205ENST00000623219 ZFP91Q96JP5 570 aaPredicted RBP17.02■□□□□ 0.32
LINC00643-205ENST00000623219 SPATA33Q96N06 139 aa17.02■□□□□ 0.32
LINC00643-205ENST00000623219 EHMT1Q9H9B1 1298 aa17.02■□□□□ 0.32
LINC00643-205ENST00000623219 NAP1L2Q9ULW6 460 aaPredicted RBP17.02■□□□□ 0.32
LINC00643-205ENST00000623219 CHD9Q3L8U1 2897 aa17.02■□□□□ 0.31
LINC00643-205ENST00000623219 SPDYE3A6NKU9 549 aa17.01■□□□□ 0.31
LINC00643-205ENST00000623219 PITPNM1O00562 1244 aa17.01■□□□□ 0.31
LINC00643-205ENST00000623219 ZNF286BP0CG31 522 aa17.01■□□□□ 0.31
LINC00643-205ENST00000623219 CYP2C9P11712 490 aa17.01■□□□□ 0.31
LINC00643-205ENST00000623219 NAPAP54920 295 aa17.01■□□□□ 0.31
LINC00643-205ENST00000623219 SEMA3FQ13275 785 aa17.01■□□□□ 0.31
LINC00643-205ENST00000623219 NEDD9Q14511 834 aa17.01■□□□□ 0.31
LINC00643-205ENST00000623219 UBE2SQ16763 222 aa17.01■□□□□ 0.31
LINC00643-205ENST00000623219 TMEM240Q5SV17 173 aa17.01■□□□□ 0.31
LINC00643-205ENST00000623219 Q7L0L9 218 aa17.01■□□□□ 0.31
LINC00643-205ENST00000623219 MLXIPQ9HAP2 919 aa17.01■□□□□ 0.31
LINC00643-205ENST00000623219 FAM217BQ9NTX9 383 aaPredicted RBP17.01■□□□□ 0.31
LINC00643-205ENST00000623219 NOD1Q9Y239 953 aa17.01■□□□□ 0.31
LINC00643-205ENST00000623219 SPATA31C2B4DYI2 1134 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 HAS3O00219 553 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 SORBS3O60504 671 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 PPFIA4O75335 1185 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 PSEN2P49810 448 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 CCL23P55773 120 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 CHMP4BP1P59074 171 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 MFSD10Q14728 455 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 ZNF697Q5TEC3 545 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 RASIP1Q5U651 963 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 METTL7BQ6UX53 244 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 C16orf59Q7L2K0 433 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 NLRX1Q86UT6 975 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 PPP1R13LQ8WUF5 828 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 MTIF3Q9H2K0 278 aaKnown RBP17■□□□□ 0.31
LINC00643-205ENST00000623219 BARHL2Q9NY43 387 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 RTEL1Q9NZ71 1219 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 GTF2IRD1Q9UHL9 959 aa17■□□□□ 0.31
LINC00643-205ENST00000623219 STXBP3O00186 592 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 NOP56O00567 594 aaKnown RBP16.99■□□□□ 0.31
LINC00643-205ENST00000623219 PFKMP08237 780 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 ACRP10323 421 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 ADCY7P51828 1080 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 BFSP2Q13515 415 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 PTGISQ16647 500 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 KIAA0753Q2KHM9 967 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 GDF6Q6KF10 455 aaPredicted RBP16.99■□□□□ 0.31
LINC00643-205ENST00000623219 TYW1BQ6NUM6 668 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 ZNF365Q70YC5 407 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 RUFY3Q7L099 469 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 CCDC155Q8N6L0 562 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 GPRASP2Q96D09 838 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 CDHR1Q96JP9 859 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 SENP7Q9BQF6 1050 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 USP26Q9BXU7 913 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 GLT8D2Q9H1C3 349 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 RIC8AQ9NPQ8 531 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 MTMR10Q9NXD2 777 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 PCDHA6Q9UN73 950 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 PCDHA8Q9Y5H6 950 aa16.99■□□□□ 0.31
LINC00643-205ENST00000623219 V9GY48 417 aaPredicted RBP16.99■□□□□ 0.31
LINC00643-205ENST00000623219 TMEM265A0A087WTH1 108 aa16.98■□□□□ 0.31
LINC00643-205ENST00000623219 RFC2P35250 354 aa16.98■□□□□ 0.31
LINC00643-205ENST00000623219 ADD1P35611 737 aaKnown RBP16.98■□□□□ 0.31
LINC00643-205ENST00000623219 PFKFB3Q16875 520 aaPredicted RBP16.98■□□□□ 0.31
LINC00643-205ENST00000623219 RPUSD2Q8IZ73 545 aaKnown RBP16.98■□□□□ 0.31
LINC00643-205ENST00000623219 C7orf31Q8N865 590 aa16.98■□□□□ 0.31
LINC00643-205ENST00000623219 GIMAP8Q8ND71 665 aaPredicted RBP16.98■□□□□ 0.31
LINC00643-205ENST00000623219 CAGE1Q8TC20 777 aa16.98■□□□□ 0.31
LINC00643-205ENST00000623219 HERVK_113Q902F9 699 aa16.98■□□□□ 0.31
LINC00643-205ENST00000623219 SCLYQ96I15 445 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms