RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 SLC12A4Q9UP95 1085 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 MYO5AQ9Y4I1 1855 aaKnown RBP11.21□□□□□ -0.61
VPS39-214ENST00000614932 BPIFB4P59827 614 aa11.21□□□□□ -0.61
VPS39-214ENST00000614932 ITGB3BPQ13352 177 aaPredicted RBP11.21□□□□□ -0.61
VPS39-214ENST00000614932 RNF220Q5VTB9 566 aa11.21□□□□□ -0.61
VPS39-214ENST00000614932 ZNF280DQ6N043 979 aa11.21□□□□□ -0.61
VPS39-214ENST00000614932 NAA16Q6N069 864 aaPredicted RBP11.21□□□□□ -0.61
VPS39-214ENST00000614932 TMEM154Q6P9G4 183 aa11.21□□□□□ -0.61
VPS39-214ENST00000614932 PPFIBP1Q86W92 1011 aa11.21□□□□□ -0.61
VPS39-214ENST00000614932 AMIGO3Q86WK7 504 aa11.21□□□□□ -0.61
VPS39-214ENST00000614932 CMTR1Q8N1G2 835 aaKnown RBP11.21□□□□□ -0.61
VPS39-214ENST00000614932 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.21□□□□□ -0.61
VPS39-214ENST00000614932 VCXQ9H320 206 aa11.21□□□□□ -0.61
VPS39-214ENST00000614932 VCX3BQ9H321 246 aa11.21□□□□□ -0.61
VPS39-214ENST00000614932 VCX3AQ9NNX9 186 aa11.21□□□□□ -0.61
VPS39-214ENST00000614932 ZNHIT6Q9NWK9 470 aaKnown RBP11.21□□□□□ -0.61
VPS39-214ENST00000614932 FGFR2P21802 821 aa11.21□□□□□ -0.62
VPS39-214ENST00000614932 CFAP58Q5T655 872 aa11.21□□□□□ -0.62
VPS39-214ENST00000614932 IQCF2Q8IXL9 164 aa11.21□□□□□ -0.62
VPS39-214ENST00000614932 SPICE1Q8N0Z3 855 aa11.21□□□□□ -0.62
VPS39-214ENST00000614932 LCORLQ8N3X6 602 aa11.21□□□□□ -0.62
VPS39-214ENST00000614932 SMC1BQ8NDV3 1235 aa11.21□□□□□ -0.62
VPS39-214ENST00000614932 CAGE1Q8TC20 777 aa11.21□□□□□ -0.62
VPS39-214ENST00000614932 SDR42E1Q8WUS8 393 aa11.21□□□□□ -0.62
VPS39-214ENST00000614932 CAPZA3Q96KX2 299 aa11.21□□□□□ -0.62
VPS39-214ENST00000614932 TUBE1Q9UJT0 475 aa11.21□□□□□ -0.62
VPS39-214ENST00000614932 HPS5Q9UPZ3 1129 aa11.21□□□□□ -0.62
VPS39-214ENST00000614932 LRRC42Q9Y546 428 aa11.21□□□□□ -0.62
VPS39-214ENST00000614932 TACC3Q9Y6A5 838 aa11.21□□□□□ -0.62
VPS39-214ENST00000614932 LAMA4Q16363 1823 aa11.21□□□□□ -0.62
VPS39-214ENST00000614932 MROH5Q6ZUA9 1318 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 SYNRGQ9UMZ2 1314 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 CARMIL3Q8ND23 1372 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 GOLGA6L10A0A0M3HER8 536 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 PSMD14O00487 310 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 GFPT2O94808 682 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 CMPK2Q5EBM0 449 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 TBC1D9BQ66K14 1250 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 GET4Q7L5D6 327 aaPredicted RBP11.2□□□□□ -0.62
VPS39-214ENST00000614932 CD302Q8IX05 232 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 MLKLQ8NB16 471 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 WHAMMQ8TF30 809 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 TRAIPQ9BWF2 469 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 EPB41L4AQ9HCS5 686 aaPredicted RBP11.2□□□□□ -0.62
VPS39-214ENST00000614932 RHBDL2Q9NX52 303 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 COL4A1P02462 1669 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 ZNF233A6NK53 670 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 LGR5O75473 907 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 ALOX15P16050 662 aaPredicted RBP11.2□□□□□ -0.62
VPS39-214ENST00000614932 KLRK1P26718 216 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 PCK1P35558 622 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 PHEXP78562 749 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 KLC1Q07866 573 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 TTF1Q15361 905 aaPredicted RBP11.2□□□□□ -0.62
VPS39-214ENST00000614932 PAPD7Q5XG87 772 aaKnown RBP11.2□□□□□ -0.62
VPS39-214ENST00000614932 SYNE3Q6ZMZ3 975 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 NCCRP1Q6ZVX7 275 aaPredicted RBP11.2□□□□□ -0.62
VPS39-214ENST00000614932 ILDR1Q86SU0 546 aaPredicted RBP11.2□□□□□ -0.62
VPS39-214ENST00000614932 IQCKQ8N0W5 287 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 CELF1Q92879 486 aaKnown RBP11.2□□□□□ -0.62
VPS39-214ENST00000614932 STRBPQ96SI9 672 aaKnown RBP11.2□□□□□ -0.62
VPS39-214ENST00000614932 NAPBQ9H115 298 aa11.2□□□□□ -0.62
VPS39-214ENST00000614932 MYH14Q7Z406 1995 aaKnown RBP11.19□□□□□ -0.62
VPS39-214ENST00000614932 TCRBV5S4A2TA0A5A2 114 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 MINDY4BA8MYZ0 360 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 ENC1O14682 589 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 USO1O60763 962 aaKnown RBP11.19□□□□□ -0.62
VPS39-214ENST00000614932 SRGAP2O75044 1071 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 PAK2Q13177 524 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 RBM26Q5T8P6 1007 aaKnown RBP11.19□□□□□ -0.62
VPS39-214ENST00000614932 CEP128Q6ZU80 1094 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 ADGRA1Q86SQ6 560 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 SAPCD2Q86UD0 394 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 HOOK3Q86VS8 718 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 NOC3LQ8WTT2 800 aaKnown RBP11.19□□□□□ -0.62
VPS39-214ENST00000614932 IFT43Q96FT9 208 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 RPS6KC1Q96S38 1066 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 SLF1Q9BQI6 1058 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 AGXT2Q9BYV1 514 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 ARHGEF10LQ9HCE6 1279 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 CIDEBQ9UHD4 219 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 SLC4A4Q9Y6R1 1079 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 GNPATO15228 680 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 PDHA1P08559 390 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 UQCRFS1P1P0C7P4 283 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 NQO1P15559 274 aaKnown RBP11.19□□□□□ -0.62
VPS39-214ENST00000614932 RFC5P40937 340 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 NLRP5P59047 1200 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 KIF5AQ12840 1032 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 IFNL3Q8IZI9 196 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 ZNF274Q96GC6 653 aaPredicted RBP11.19□□□□□ -0.62
VPS39-214ENST00000614932 MPHOSPH6Q99547 160 aaKnown RBP11.19□□□□□ -0.62
VPS39-214ENST00000614932 CDCA7Q9BWT1 371 aaPredicted RBP11.19□□□□□ -0.62
VPS39-214ENST00000614932 OXCT2Q9BYC2 517 aaPredicted RBP11.19□□□□□ -0.62
VPS39-214ENST00000614932 TFCP2L1Q9NZI6 479 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 THRAP3Q9Y2W1 955 aaKnown RBP11.19□□□□□ -0.62
VPS39-214ENST00000614932 NWD2Q9ULI1 1742 aa11.19□□□□□ -0.62
VPS39-214ENST00000614932 CYP2D7A0A087X1C5 515 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 KRT38O76015 456 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 ATP1A1P05023 1023 aaKnown RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms