RNA–Protein interactions for RNA: ENST00000610401.4

SSBP3-216, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 5 BASIC

Gene SSBP3, Length 3,168 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-216ENST00000610401 PARP4Q9UKK3 1724 aaKnown RBP22.52■■□□□ 1.2
SSBP3-216ENST00000610401 TAL1P17542 331 aaPredicted RBP22.52■■□□□ 1.2
SSBP3-216ENST00000610401 CDK8P49336 464 aa22.52■■□□□ 1.2
SSBP3-216ENST00000610401 KCNMA1Q12791 1236 aa22.52■■□□□ 1.2
SSBP3-216ENST00000610401 FNBP4Q8N3X1 1017 aaPredicted RBP22.52■■□□□ 1.2
SSBP3-216ENST00000610401 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.52■■□□□ 1.26e-7■■■■■ 128.1
SSBP3-216ENST00000610401 EIF3HO15372 352 aaKnown RBP eCLIP22.52■■□□□ 1.2
SSBP3-216ENST00000610401 STAT3P40763 770 aa22.52■■□□□ 1.2
SSBP3-216ENST00000610401 ODF2Q5BJF6 829 aa22.52■■□□□ 1.2
SSBP3-216ENST00000610401 FAM83BQ5T0W9 1011 aa22.52■■□□□ 1.2
SSBP3-216ENST00000610401 TTBK2Q6IQ55 1244 aa22.52■■□□□ 1.2
SSBP3-216ENST00000610401 TEX11Q8IYF3 940 aa22.52■■□□□ 1.2
SSBP3-216ENST00000610401 RETREG2Q8NC44 543 aa22.52■■□□□ 1.2
SSBP3-216ENST00000610401 NOC3LQ8WTT2 800 aaKnown RBP22.52■■□□□ 1.2
SSBP3-216ENST00000610401 C7orf25Q9BPX7 421 aa22.52■■□□□ 1.2
SSBP3-216ENST00000610401 TCP1P17987 556 aaKnown RBP22.51■■□□□ 1.19
SSBP3-216ENST00000610401 BTDP43251 543 aa22.51■■□□□ 1.19
SSBP3-216ENST00000610401 GNAQP50148 359 aa22.51■■□□□ 1.19
SSBP3-216ENST00000610401 EPHB4P54760 987 aa22.51■■□□□ 1.19
SSBP3-216ENST00000610401 CFAP221Q4G0U5 840 aa22.51■■□□□ 1.19
SSBP3-216ENST00000610401 HERC4Q5GLZ8 1057 aaPredicted RBP22.51■■□□□ 1.19
SSBP3-216ENST00000610401 KRT79Q5XKE5 535 aa22.51■■□□□ 1.19
SSBP3-216ENST00000610401 MPHOSPH10O00566 681 aaKnown RBP22.51■■□□□ 1.19
SSBP3-216ENST00000610401 CEP104O60308 925 aa22.51■■□□□ 1.19
SSBP3-216ENST00000610401 TLR2O60603 784 aa22.51■■□□□ 1.19
SSBP3-216ENST00000610401 DCAF17Q5H9S7 520 aaPredicted RBP22.51■■□□□ 1.19
SSBP3-216ENST00000610401 KRT25Q7Z3Z0 450 aa22.51■■□□□ 1.19
SSBP3-216ENST00000610401 ZNF233A6NK53 670 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 OPA1O60313 960 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 RPS6KA5O75582 802 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 GNA11P29992 359 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 LLGL1Q15334 1064 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 SFMBT2Q5VUG0 894 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 CENPPQ6IPU0 288 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 PURBQ96QR8 312 aaKnown RBP22.5■■□□□ 1.19
SSBP3-216ENST00000610401 IKZF4Q9H2S9 585 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 GRIN2DO15399 1336 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 BCL9LQ86UU0 1499 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 SMIM23A6NLE4 172 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 GNPATO15228 680 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 KLHL30Q0D2K2 578 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 MKRN4PQ13434 485 aaPredicted RBP22.5■■□□□ 1.19
SSBP3-216ENST00000610401 TRMT1LQ7Z2T5 733 aaKnown RBP22.5■■□□□ 1.19
SSBP3-216ENST00000610401 BAP1Q92560 729 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 KIAA1024Q9UPX6 916 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 PALM3A6NDB9 673 aaPredicted RBP22.5■■□□□ 1.19
SSBP3-216ENST00000610401 E7EVH7 732 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 SLC9C1Q4G0N8 1177 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 AMIGO3Q86WK7 504 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 EFCAB13Q8IY85 973 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 MMGT1Q8N4V1 131 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 CASKIN2Q8WXE0 1202 aa22.5■■□□□ 1.19
SSBP3-216ENST00000610401 COPB2P35606 906 aa22.49■■□□□ 1.19
SSBP3-216ENST00000610401 PRPF4BQ13523 1007 aaKnown RBP22.49■■□□□ 1.19
SSBP3-216ENST00000610401 KCTD1Q719H9 257 aa22.49■■□□□ 1.19
SSBP3-216ENST00000610401 ZMYND12Q9H0C1 365 aa22.49■■□□□ 1.19
SSBP3-216ENST00000610401 RAD51CO43502 376 aa22.49■■□□□ 1.19
SSBP3-216ENST00000610401 TMOD1P28289 359 aa22.49■■□□□ 1.19
SSBP3-216ENST00000610401 IFT88Q13099 833 aa22.49■■□□□ 1.19
SSBP3-216ENST00000610401 TMEM266Q2M3C6 531 aa22.49■■□□□ 1.19
SSBP3-216ENST00000610401 PDXDC1Q6P996 788 aa22.49■■□□□ 1.19
SSBP3-216ENST00000610401 TSG101Q99816 390 aa22.49■■□□□ 1.19
SSBP3-216ENST00000610401 OTUD6BQ8N6M0 293 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 DDX47Q9H0S4 455 aaKnown RBP22.48■■□□□ 1.19
SSBP3-216ENST00000610401 PANK4Q9NVE7 773 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.48■■□□□ 1.19
SSBP3-216ENST00000610401 USP17L15C9J2P7 530 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 USP17L13C9JLJ4 530 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 USP17L11C9JVI0 530 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 USP17L18D6R9N7 530 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 USP17L22D6RA61 530 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 USP17L17D6RBQ6 530 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 USP17L19D6RCP7 530 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 USP17L20D6RJB6 530 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 KIAA0754O94854 1291 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 PCP11498 1178 aaKnown RBP22.48■■□□□ 1.19
SSBP3-216ENST00000610401 USP17L24Q0WX57 530 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 USP17L6PQ6QN14 398 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 CCDC84Q86UT8 332 aaPredicted RBP22.48■■□□□ 1.19
SSBP3-216ENST00000610401 MYOCDQ8IZQ8 938 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 SH3GLB2Q9NR46 395 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 TIAM2Q8IVF5 1701 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 POTEB3A0JP26 581 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 FAM196BA6NMK8 535 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 POTECB2RU33 542 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 BAG3O95817 575 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 GJB7Q6PEY0 223 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 POTEBQ6S5H4 581 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 ZSCAN29Q8IWY8 852 aaPredicted RBP22.48■■□□□ 1.19
SSBP3-216ENST00000610401 UHMK1Q8TAS1 419 aaKnown RBP22.48■■□□□ 1.19
SSBP3-216ENST00000610401 DPH5Q9H2P9 285 aa22.48■■□□□ 1.19
SSBP3-216ENST00000610401 A0A087WUV0 522 aaPredicted RBP22.47■■□□□ 1.19
SSBP3-216ENST00000610401 UNC13DQ70J99 1090 aa22.47■■□□□ 1.19
SSBP3-216ENST00000610401 IFT20Q8IY31 132 aa22.47■■□□□ 1.19
SSBP3-216ENST00000610401 PLAAQ9Y263 795 aa22.47■■□□□ 1.19
SSBP3-216ENST00000610401 SFI1A8K8P3 1242 aa22.47■■□□□ 1.19
SSBP3-216ENST00000610401 SLC9A1P19634 815 aa22.47■■□□□ 1.19
SSBP3-216ENST00000610401 COASYQ13057 564 aa22.47■■□□□ 1.19
SSBP3-216ENST00000610401 SF3B3Q15393 1217 aaKnown RBP22.47■■□□□ 1.19
SSBP3-216ENST00000610401 CHADLQ6NUI6 762 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms