RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 HDAC6Q9UBN7 1215 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 SCN10AQ9Y5Y9 1956 aa13.2□□□□□ -0.3
HIF3A-217ENST00000600236 NOP56O00567 594 aaKnown RBP13.2□□□□□ -0.3
HIF3A-217ENST00000600236 PRC1O43663 620 aa13.2□□□□□ -0.3
HIF3A-217ENST00000600236 RGS20O76081 388 aa13.2□□□□□ -0.3
HIF3A-217ENST00000600236 HOXD8P13378 290 aaPredicted RBP13.2□□□□□ -0.3
HIF3A-217ENST00000600236 UBA1P22314 1058 aaKnown RBP13.2□□□□□ -0.3
HIF3A-217ENST00000600236 ANTXR2P58335 489 aa13.2□□□□□ -0.3
HIF3A-217ENST00000600236 RBL2Q08999 1139 aa13.2□□□□□ -0.3
HIF3A-217ENST00000600236 PTK7Q13308 1070 aa13.2□□□□□ -0.3
HIF3A-217ENST00000600236 NEDD9Q14511 834 aa13.2□□□□□ -0.3
HIF3A-217ENST00000600236 TJAP1Q5JTD0 557 aa13.2□□□□□ -0.3
HIF3A-217ENST00000600236 PIBF1Q8WXW3 757 aa13.2□□□□□ -0.3
HIF3A-217ENST00000600236 VWCEQ96DN2 955 aa13.2□□□□□ -0.3
HIF3A-217ENST00000600236 LY9Q9HBG7 655 aa13.2□□□□□ -0.3
HIF3A-217ENST00000600236 TAF6LQ9Y6J9 622 aa13.2□□□□□ -0.3
HIF3A-217ENST00000600236 HAS3O00219 553 aa13.19□□□□□ -0.3
HIF3A-217ENST00000600236 FIBPO43427 364 aa13.19□□□□□ -0.3
HIF3A-217ENST00000600236 GTPBP6O43824 516 aaPredicted RBP13.19□□□□□ -0.3
HIF3A-217ENST00000600236 EFCAB14O75071 495 aa13.19□□□□□ -0.3
HIF3A-217ENST00000600236 CA3P07451 260 aa13.19□□□□□ -0.3
HIF3A-217ENST00000600236 MYOGP15173 224 aa13.19□□□□□ -0.3
HIF3A-217ENST00000600236 SLC35G1Q2M3R5 365 aa13.19□□□□□ -0.3
HIF3A-217ENST00000600236 HSDL1Q3SXM5 330 aa13.19□□□□□ -0.3
HIF3A-217ENST00000600236 RNF20Q5VTR2 975 aa13.19□□□□□ -0.3
HIF3A-217ENST00000600236 CNKSR3Q6P9H4 555 aa13.19□□□□□ -0.3
HIF3A-217ENST00000600236 HERC6Q8IVU3 1022 aa13.19□□□□□ -0.3
HIF3A-217ENST00000600236 USP38Q8NB14 1042 aa13.19□□□□□ -0.3
HIF3A-217ENST00000600236 IL31RAQ8NI17 732 aa13.19□□□□□ -0.3
HIF3A-217ENST00000600236 THEGQ9P2T0 379 aa13.19□□□□□ -0.3
HIF3A-217ENST00000600236 FRMPD4Q14CM0 1322 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 C17orf102A2RUQ5 167 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 SH2B2O14492 632 aaPredicted RBP13.18□□□□□ -0.3
HIF3A-217ENST00000600236 SORBS3O60504 671 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 CKBP12277 381 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 ICAM3P32942 547 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 LIFRP42702 1097 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 ADGRE1Q14246 886 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 XRRA1Q6P2D8 792 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 SYNE3Q6ZMZ3 975 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 NLRX1Q86UT6 975 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 IL27Q8NEV9 243 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 ATXN2LQ8WWM7 1075 aaKnown RBP13.18□□□□□ -0.3
HIF3A-217ENST00000600236 INPP4AQ96PE3 977 aaPredicted RBP13.18□□□□□ -0.3
HIF3A-217ENST00000600236 ESYT1Q9BSJ8 1104 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 MYL10Q9BUA6 226 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 USP26Q9BXU7 913 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 LSG1Q9H089 658 aaKnown RBP13.18□□□□□ -0.3
HIF3A-217ENST00000600236 ANO2Q9NQ90 1003 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 ZNF215Q9UL58 517 aaPredicted RBP13.18□□□□□ -0.3
HIF3A-217ENST00000600236 SLC12A7Q9Y666 1083 aa13.18□□□□□ -0.3
HIF3A-217ENST00000600236 EMSYQ7Z589 1322 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 ABHD14A-ACY1A0A1B0GW23 586 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 H3BRB1 525 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 PIK3CDO00329 1044 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 SLC27A2O14975 620 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 TLL1O43897 1013 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 CXCL10P02778 98 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 GNAT1P11488 350 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 SP2Q02086 613 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 CCDC85BQ15834 202 aaPredicted RBP13.17□□□□□ -0.3
HIF3A-217ENST00000600236 PCNX4Q63HM2 1172 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 METTL7BQ6UX53 244 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 GIMAP8Q8ND71 665 aaPredicted RBP13.17□□□□□ -0.3
HIF3A-217ENST00000600236 DHX38Q92620 1227 aaKnown RBP13.17□□□□□ -0.3
HIF3A-217ENST00000600236 CDHR1Q96JP9 859 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 CTAGE1Q96RT6 745 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 C16orf70Q9BSU1 422 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 ZBED2Q9BTP6 218 aa13.17□□□□□ -0.3
HIF3A-217ENST00000600236 TUT1Q9H6E5 874 aaKnown RBP13.17□□□□□ -0.3
HIF3A-217ENST00000600236 SPATA31C2B4DYI2 1134 aa13.16□□□□□ -0.3
HIF3A-217ENST00000600236 LGALS2P05162 132 aa13.16□□□□□ -0.3
HIF3A-217ENST00000600236 WDR5P61964 334 aaKnown RBP13.16□□□□□ -0.3
HIF3A-217ENST00000600236 MRPS9P82933 396 aaKnown RBP13.16□□□□□ -0.3
HIF3A-217ENST00000600236 IKBKEQ14164 716 aa13.16□□□□□ -0.3
HIF3A-217ENST00000600236 BMP2KLQ5H9B9 411 aa13.16□□□□□ -0.3
HIF3A-217ENST00000600236 CREB3L3Q68CJ9 461 aa13.16□□□□□ -0.3
HIF3A-217ENST00000600236 USP17L6PQ6QN14 398 aa13.16□□□□□ -0.3
HIF3A-217ENST00000600236 MICALL1Q8N3F8 863 aa13.16□□□□□ -0.3
HIF3A-217ENST00000600236 ATP6V0A1Q93050 837 aa13.16□□□□□ -0.3
HIF3A-217ENST00000600236 ZFP91Q96JP5 570 aaPredicted RBP13.16□□□□□ -0.3
HIF3A-217ENST00000600236 RTEL1Q9NZ71 1219 aa13.16□□□□□ -0.3
HIF3A-217ENST00000600236 SPDYE3A6NKU9 549 aa13.15□□□□□ -0.3
HIF3A-217ENST00000600236 RSPH10B2B2RC85 870 aa13.15□□□□□ -0.3
HIF3A-217ENST00000600236 NBNO60934 754 aa13.15□□□□□ -0.3
HIF3A-217ENST00000600236 CAND2O75155 1236 aa13.15□□□□□ -0.3
HIF3A-217ENST00000600236 PLEKHA8P1O95397 391 aa13.15□□□□□ -0.3
HIF3A-217ENST00000600236 RSPH10BP0C881 870 aa13.15□□□□□ -0.3
HIF3A-217ENST00000600236 THPOP40225 353 aa13.15□□□□□ -0.3
HIF3A-217ENST00000600236 MRPS5P82675 430 aaKnown RBP13.15□□□□□ -0.3
HIF3A-217ENST00000600236 NECTIN1Q15223 517 aa13.15□□□□□ -0.3
HIF3A-217ENST00000600236 ZNF618Q5T7W0 954 aa13.15□□□□□ -0.3
HIF3A-217ENST00000600236 CENPQQ7L2Z9 268 aaPredicted RBP13.15□□□□□ -0.3
HIF3A-217ENST00000600236 CYFIP1Q7L576 1253 aa13.15□□□□□ -0.3
HIF3A-217ENST00000600236 SERINC5Q86VE9 423 aa13.15□□□□□ -0.3
HIF3A-217ENST00000600236 GPKOWQ92917 476 aaPredicted RBP eCLIP13.15□□□□□ -0.3
HIF3A-217ENST00000600236 SENP7Q9BQF6 1050 aa13.15□□□□□ -0.3
HIF3A-217ENST00000600236 PSTPIP2Q9H939 334 aa13.15□□□□□ -0.3
HIF3A-217ENST00000600236 EHMT1Q9H9B1 1298 aa13.15□□□□□ -0.3
HIF3A-217ENST00000600236 TANC1Q9C0D5 1861 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms