RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 SPATA33Q96N06 139 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 GUCD1Q96NT3 240 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 HIPK3Q9H422 1215 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 ZSWIM6Q9HCJ5 1215 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 RTEL1Q9NZ71 1219 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 CNTNAP5Q8WYK1 1306 aa16.21■□□□□ 0.19
LIG1-218ENST00000599322 MEIS2O14770 477 aa16.21■□□□□ 0.19
LIG1-218ENST00000599322 CPLX1O14810 134 aa16.21■□□□□ 0.19
LIG1-218ENST00000599322 PPFIA4O75335 1185 aa16.21■□□□□ 0.19
LIG1-218ENST00000599322 ADD1P35611 737 aaKnown RBP16.21■□□□□ 0.19
LIG1-218ENST00000599322 NBPF20Q3BBV1 942 aa16.21■□□□□ 0.19
LIG1-218ENST00000599322 CELF3Q5SZQ8 465 aaKnown RBP16.21■□□□□ 0.19
LIG1-218ENST00000599322 TRIM22Q8IYM9 498 aa16.21■□□□□ 0.19
LIG1-218ENST00000599322 CCDC155Q8N6L0 562 aa16.21■□□□□ 0.19
LIG1-218ENST00000599322 RETREG2Q8NC44 543 aa16.21■□□□□ 0.19
LIG1-218ENST00000599322 PPTC7Q8NI37 304 aa16.21■□□□□ 0.19
LIG1-218ENST00000599322 PPP1R12CQ9BZL4 782 aa16.21■□□□□ 0.19
LIG1-218ENST00000599322 ALDH8A1Q9H2A2 487 aaPredicted RBP16.21■□□□□ 0.19
LIG1-218ENST00000599322 MTIF3Q9H2K0 278 aaKnown RBP16.21■□□□□ 0.19
LIG1-218ENST00000599322 TBX21Q9UL17 535 aa16.21■□□□□ 0.19
LIG1-218ENST00000599322 SMCO2A6NFE2 343 aa16.2■□□□□ 0.18
LIG1-218ENST00000599322 CD4P01730 458 aa16.2■□□□□ 0.18
LIG1-218ENST00000599322 WWC2Q6AWC2 1192 aa16.2■□□□□ 0.18
LIG1-218ENST00000599322 RPUSD2Q8IZ73 545 aaKnown RBP16.2■□□□□ 0.18
LIG1-218ENST00000599322 C7orf31Q8N865 590 aa16.2■□□□□ 0.18
LIG1-218ENST00000599322 IL31RAQ8NI17 732 aa16.2■□□□□ 0.18
LIG1-218ENST00000599322 FAM161BQ96MY7 647 aa16.2■□□□□ 0.18
LIG1-218ENST00000599322 INPP4AQ96PE3 977 aaPredicted RBP16.2■□□□□ 0.18
LIG1-218ENST00000599322 TRPV6Q9H1D0 765 aa16.2■□□□□ 0.18
LIG1-218ENST00000599322 C6orf50Q9HD87 102 aa16.2■□□□□ 0.18
LIG1-218ENST00000599322 RIC8AQ9NPQ8 531 aa16.2■□□□□ 0.18
LIG1-218ENST00000599322 PDRG1Q9NUG6 133 aa16.2■□□□□ 0.18
LIG1-218ENST00000599322 BARHL2Q9NY43 387 aa16.2■□□□□ 0.18
LIG1-218ENST00000599322 PCDHA6Q9UN73 950 aa16.2■□□□□ 0.18
LIG1-218ENST00000599322 PCDHA8Q9Y5H6 950 aa16.2■□□□□ 0.18
LIG1-218ENST00000599322 SPATA31C2B4DYI2 1134 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 MAFGO15525 162 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 SCG2P13521 617 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 ITGB8P26012 769 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 GNA11P29992 359 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 CDC27P30260 824 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 ICAM3P32942 547 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 ZNF76P36508 570 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 ANAPC15P60006 121 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 BFSP2Q13515 415 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 ANKRD1Q15327 319 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 UBE2SQ16763 222 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 PFKFB3Q16875 520 aaPredicted RBP16.19■□□□□ 0.18
LIG1-218ENST00000599322 MYSM1Q5VVJ2 828 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 BICD2Q8TD16 824 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 GPRASP2Q96D09 838 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 ZFP91Q96JP5 570 aaPredicted RBP16.19■□□□□ 0.18
LIG1-218ENST00000599322 RNPC3Q96LT9 517 aaKnown RBP16.19■□□□□ 0.18
LIG1-218ENST00000599322 AGXT2Q9BYV1 514 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 FRMPD4Q14CM0 1322 aa16.19■□□□□ 0.18
LIG1-218ENST00000599322 CDH23Q9H251 3354 aa16.18■□□□□ 0.18
LIG1-218ENST00000599322 PRPF3O43395 683 aaKnown RBP16.18■□□□□ 0.18
LIG1-218ENST00000599322 SORBS3O60504 671 aa16.18■□□□□ 0.18
LIG1-218ENST00000599322 B4GALT4O60513 344 aa16.18■□□□□ 0.18
LIG1-218ENST00000599322 UBA1P22314 1058 aaKnown RBP16.18■□□□□ 0.18
LIG1-218ENST00000599322 PSEN2P49810 448 aa16.18■□□□□ 0.18
LIG1-218ENST00000599322 CCT2P78371 535 aaKnown RBP16.18■□□□□ 0.18
LIG1-218ENST00000599322 MRPS9P82933 396 aaKnown RBP16.18■□□□□ 0.18
LIG1-218ENST00000599322 AP3B2Q13367 1082 aa16.18■□□□□ 0.18
LIG1-218ENST00000599322 PSRC1Q6PGN9 363 aaPredicted RBP16.18■□□□□ 0.18
LIG1-218ENST00000599322 CCDC148Q8NFR7 591 aa16.18■□□□□ 0.18
LIG1-218ENST00000599322 ZNF274Q96GC6 653 aaPredicted RBP16.18■□□□□ 0.18
LIG1-218ENST00000599322 SENP7Q9BQF6 1050 aa16.18■□□□□ 0.18
LIG1-218ENST00000599322 RNF26Q9BY78 433 aaPredicted RBP16.18■□□□□ 0.18
LIG1-218ENST00000599322 UPF3BQ9BZI7 483 aaKnown RBP16.18■□□□□ 0.18
LIG1-218ENST00000599322 GRIN2DO15399 1336 aa16.18■□□□□ 0.18
LIG1-218ENST00000599322 STXBP3O00186 592 aa16.17■□□□□ 0.18
LIG1-218ENST00000599322 CDKL5O76039 1030 aa16.17■□□□□ 0.18
LIG1-218ENST00000599322 RGS20O76081 388 aa16.17■□□□□ 0.18
LIG1-218ENST00000599322 PDIA3P30101 505 aaKnown RBP16.17■□□□□ 0.18
LIG1-218ENST00000599322 CYP2C18P33260 490 aa16.17■□□□□ 0.18
LIG1-218ENST00000599322 SSRP1Q08945 709 aaKnown RBP16.17■□□□□ 0.18
LIG1-218ENST00000599322 MTMR1Q13613 665 aa16.17■□□□□ 0.18
LIG1-218ENST00000599322 MFSD10Q14728 455 aa16.17■□□□□ 0.18
LIG1-218ENST00000599322 METTL7BQ6UX53 244 aa16.17■□□□□ 0.18
LIG1-218ENST00000599322 CYFIP1Q7L576 1253 aa16.17■□□□□ 0.18
LIG1-218ENST00000599322 ALG1Q9BT22 464 aa16.17■□□□□ 0.18
LIG1-218ENST00000599322 SLC26A6Q9BXS9 759 aa16.17■□□□□ 0.18
LIG1-218ENST00000599322 FAM217BQ9NTX9 383 aaPredicted RBP16.17■□□□□ 0.18
LIG1-218ENST00000599322 ZNF215Q9UL58 517 aaPredicted RBP16.17■□□□□ 0.18
LIG1-218ENST00000599322 KIAA1217Q5T5P2 1943 aa16.16■□□□□ 0.18
LIG1-218ENST00000599322 IFNAR1P17181 557 aa16.16■□□□□ 0.18
LIG1-218ENST00000599322 EPHB4P54760 987 aa16.16■□□□□ 0.18
LIG1-218ENST00000599322 EVCP57679 992 aa16.16■□□□□ 0.18
LIG1-218ENST00000599322 FUT2Q10981 343 aa16.16■□□□□ 0.18
LIG1-218ENST00000599322 PTGISQ16647 500 aa16.16■□□□□ 0.18
LIG1-218ENST00000599322 KIAA0753Q2KHM9 967 aa16.16■□□□□ 0.18
LIG1-218ENST00000599322 ZNF697Q5TEC3 545 aa16.16■□□□□ 0.18
LIG1-218ENST00000599322 NOC4LQ9BVI4 516 aaKnown RBP16.16■□□□□ 0.18
LIG1-218ENST00000599322 TRMT13Q9NUP7 481 aaKnown RBP16.16■□□□□ 0.18
LIG1-218ENST00000599322 GBF1Q92538 1859 aa16.16■□□□□ 0.18
LIG1-218ENST00000599322 PRUNE2Q8WUY3 3088 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 CUL9Q8IWT3 2517 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 ESYT2A0FGR8 921 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 FGBP02675 491 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms