RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 LPAR1Q92633 364 aa19.05■□□□□ 0.64
SHKBP1-216ENST00000598201 CTAGE1Q96RT6 745 aa19.05■□□□□ 0.64
SHKBP1-216ENST00000598201 SLF1Q9BQI6 1058 aa19.05■□□□□ 0.64
SHKBP1-216ENST00000598201 TMX1Q9H3N1 280 aa19.05■□□□□ 0.64
SHKBP1-216ENST00000598201 SLC39A2Q9NP94 309 aa19.05■□□□□ 0.64
SHKBP1-216ENST00000598201 ABCB11O95342 1321 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 PVALEFA0A1B0GWK0 134 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 KCNJ18B7U540 433 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 ZNF76P36508 570 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 MTMR2Q13614 643 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 KCNJ12Q14500 433 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 SUPT20HL1Q3ZLR7 823 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 DHTKD1Q96HY7 919 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 DUSP9Q99956 384 aaKnown RBP19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 WDR18Q9BV38 432 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 EMILIN3Q9NT22 766 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 GINM1Q9NU53 330 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 KDM3AQ9Y4C1 1321 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 ICAM1P05362 532 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 FSTL1Q12841 308 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 CNNM4Q6P4Q7 775 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 TEX2Q8IWB9 1127 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 PRPF38AQ8NAV1 312 aaKnown RBP19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 ZKSCAN4Q969J2 545 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 C16orf45Q96MC5 204 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 FAM20AQ96MK3 541 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 NT5C3AQ9H0P0 336 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 TAB2Q9NYJ8 693 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 CCPG1Q9ULG6 757 aa19.04■□□□□ 0.64
SHKBP1-216ENST00000598201 COPB1P53618 953 aaKnown RBP19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 E4F1Q66K89 784 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 NCAPH2Q6IBW4 605 aa19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 SLC30A10Q6XR72 485 aa19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 CREBRFQ8IUR6 639 aa19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 CCAR2Q8N163 923 aaKnown RBP19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 TC2NQ8N9U0 490 aa19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 P2RX5Q93086 422 aa19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 DNAJC19Q96DA6 116 aa19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 ZFP91Q96JP5 570 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 TRIM47Q96LD4 638 aa19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 SRRTQ9BXP5 876 aaKnown RBP19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 VPS16Q9H269 839 aa19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 TRMT1Q9NXH9 659 aaKnown RBP19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 ZNF112Q9UJU3 913 aa19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 VAV3Q9UKW4 847 aa19.03■□□□□ 0.64
SHKBP1-216ENST00000598201 POTEFA5A3E0 1075 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 IDEP14735 1019 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 VCAM1P19320 739 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 CCNE1P24864 410 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 ADKP55263 362 aaKnown RBP19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 SPAG1Q07617 926 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 EHHADHQ08426 723 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 SPP2Q13103 211 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 FILIP1LQ4L180 1135 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 DCAF15Q66K64 600 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 ANKRD40Q6AI12 368 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 POTEGQ6S5H5 508 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 POTEEQ6S8J3 1075 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 CATSPER3Q86XQ3 398 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 TMEM139Q8IV31 216 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 HOOK2Q96ED9 719 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 TANGO6Q9C0B7 1094 aa19.02■□□□□ 0.64
SHKBP1-216ENST00000598201 SSBP05455 408 aaKnown RBP eCLIP19.02■□□□□ 0.63
SHKBP1-216ENST00000598201 SPATA31C1P0DKV0 1188 aa19.02■□□□□ 0.63
SHKBP1-216ENST00000598201 NF2P35240 595 aa19.02■□□□□ 0.63
SHKBP1-216ENST00000598201 COBLL1Q53SF7 1204 aa19.02■□□□□ 0.63
SHKBP1-216ENST00000598201 SCYL3Q8IZE3 742 aa19.02■□□□□ 0.63
SHKBP1-216ENST00000598201 EEF2KMTQ96G04 330 aa19.02■□□□□ 0.63
SHKBP1-216ENST00000598201 WRNIP1Q96S55 665 aa19.02■□□□□ 0.63
SHKBP1-216ENST00000598201 ZNF408Q9H9D4 720 aa19.02■□□□□ 0.63
SHKBP1-216ENST00000598201 KCND1Q9NSA2 647 aa19.02■□□□□ 0.63
SHKBP1-216ENST00000598201 NFIBO00712 420 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 N4BP3O15049 544 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 PLA2G4BP0C869 781 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 CEP135Q66GS9 1140 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 CPXCR1Q8N123 301 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 GLIS3Q8NEA6 775 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 CLEC4DQ8WXI8 215 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 LRRC27Q9C0I9 530 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 SEMA6BQ9H3T3 888 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 THAP9Q9H5L6 903 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 RAVER2Q9HCJ3 691 aaKnown RBP19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 PASKQ96RG2 1323 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 SLC26A4O43511 780 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 FLOT1O75955 427 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 HSD17B4P51659 736 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 PSMC6P62333 389 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 GTPBP4Q9BZE4 634 aaKnown RBP19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 RPAP3Q9H6T3 665 aaPredicted RBP19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 SLC38A10Q9HBR0 1119 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 COL20A1Q9P218 1284 aa19.01■□□□□ 0.63
SHKBP1-216ENST00000598201 NPHP3-ACAD11A0A0J9YXS1 232 aa19■□□□□ 0.63
SHKBP1-216ENST00000598201 EML1O00423 815 aa19■□□□□ 0.63
SHKBP1-216ENST00000598201 MEIS1O00470 390 aa19■□□□□ 0.63
SHKBP1-216ENST00000598201 CELF2O95319 508 aaKnown RBP19■□□□□ 0.63
SHKBP1-216ENST00000598201 PTPRAP18433 802 aa19■□□□□ 0.63
SHKBP1-216ENST00000598201 HAUS3Q68CZ6 603 aa19■□□□□ 0.63
SHKBP1-216ENST00000598201 CSGALNACT2Q8N6G5 542 aa19■□□□□ 0.63
SHKBP1-216ENST00000598201 CCDC112Q8NEF3 446 aa19■□□□□ 0.63
SHKBP1-216ENST00000598201 DOCK1Q14185 1865 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms