RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 RETREG2Q8NC44 543 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 WNT8BQ93098 351 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 TIFAQ96CG3 184 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 VWCEQ96DN2 955 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 JAKMIP1Q96N16 626 aaKnown RBP11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 LARP6Q9BRS8 491 aaKnown RBP11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 SPZ1Q9BXG8 430 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 CERS4Q9HA82 394 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 STXBP5LQ9Y2K9 1186 aa11.88□□□□□ -0.51
SHKBP1-210ENST00000595874 SCN10AQ9Y5Y9 1956 aa11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 SUPT20HL2P0C7V6 817 aa11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 FOSL2P15408 326 aa11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 LAMC2Q13753 1193 aa11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 RTN1Q16799 776 aa11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 TCTN1Q2MV58 587 aa11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 CELF3Q5SZQ8 465 aaKnown RBP11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 MYSM1Q5VVJ2 828 aa11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 GPR153Q6NV75 609 aa11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 APOA5Q6Q788 366 aa11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 Q6ZUG5 572 aa11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 C7orf31Q8N865 590 aa11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 DHX38Q92620 1227 aaKnown RBP11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 PRDM12Q9H4Q4 367 aa11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 TMEM260Q9NX78 707 aa11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 YBX2Q9Y2T7 364 aaKnown RBP11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 TRIP12Q14669 1992 aaPredicted RBP11.87□□□□□ -0.51
SHKBP1-210ENST00000595874 CNTNAP5Q8WYK1 1306 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 MEIS2O14770 477 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 ZBTB43O43298 467 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 KPNA6O60684 536 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 IQCF3P0C7M6 154 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 CALM1P0DP23 149 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 CALM2P0DP24 149 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 CALM3P0DP25 149 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 CDC27P30260 824 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 LIFRP42702 1097 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 GNAQP50148 359 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 NAPAP54920 295 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 EXOSC10Q01780 885 aaKnown RBP11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 CCDC85BQ15834 202 aaPredicted RBP11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 WWC2Q6AWC2 1192 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 TYW1BQ6NUM6 668 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 NFRKBQ6P4R8 1299 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 DHX32Q7L7V1 743 aaKnown RBP11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 TMTC2Q8N394 836 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 MICALL1Q8N3F8 863 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 PPTC7Q8NI37 304 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 HERVK_113Q902F9 699 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 CTAGE1Q96RT6 745 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 ZNF576Q9H609 170 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 PSTPIP2Q9H939 334 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 PRDM6Q9NQX0 595 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 SNX14Q9Y5W7 946 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 SLC4A7Q9Y6M7 1214 aa11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 V9GY48 417 aaPredicted RBP11.86□□□□□ -0.51
SHKBP1-210ENST00000595874 TANC1Q9C0D5 1861 aa11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 RFXAPO00287 272 aa11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 NOP56O00567 594 aaKnown RBP11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 ADAMTS3O15072 1205 aa11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 CTSHP09668 335 aa11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 IGFBP4P22692 258 aa11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 MARK3P27448 753 aa11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 ADD1P35611 737 aaKnown RBP11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 GHRHRQ02643 423 aa11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 FAM117BQ6P1L5 589 aa11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 RPUSD2Q8IZ73 545 aaKnown RBP11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 MAFAQ8NHW3 353 aaPredicted RBP11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 BRF1Q92994 677 aa11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 ZBTB10Q96DT7 871 aa11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 GTF2IRD1Q9UHL9 959 aa11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 MSRAQ9UJ68 235 aa11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 PCDHA6Q9UN73 950 aa11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 PCDHA8Q9Y5H6 950 aa11.85□□□□□ -0.51
SHKBP1-210ENST00000595874 ATP9AO75110 1047 aa11.84□□□□□ -0.51
SHKBP1-210ENST00000595874 LGALS2P05162 132 aa11.84□□□□□ -0.51
SHKBP1-210ENST00000595874 CCT2P78371 535 aaKnown RBP11.84□□□□□ -0.51
SHKBP1-210ENST00000595874 TRAF1Q13077 416 aa11.84□□□□□ -0.51
SHKBP1-210ENST00000595874 RASIP1Q5U651 963 aa11.84□□□□□ -0.51
SHKBP1-210ENST00000595874 SPRED2Q7Z698 418 aa11.84□□□□□ -0.51
SHKBP1-210ENST00000595874 USP38Q8NB14 1042 aa11.84□□□□□ -0.51
SHKBP1-210ENST00000595874 MAP3K14Q99558 947 aa11.84□□□□□ -0.51
SHKBP1-210ENST00000595874 LZTS2Q9BRK4 669 aa11.84□□□□□ -0.51
SHKBP1-210ENST00000595874 FAM217BQ9NTX9 383 aaPredicted RBP11.84□□□□□ -0.51
SHKBP1-210ENST00000595874 SETD4Q9NVD3 440 aa11.84□□□□□ -0.51
SHKBP1-210ENST00000595874 MAP3K20Q9NYL2 800 aaKnown RBP11.84□□□□□ -0.51
SHKBP1-210ENST00000595874 SPDYE3A6NKU9 549 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 SPATA31C2B4DYI2 1134 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 DDX39AO00148 427 aaKnown RBP11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 HAS3O00219 553 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 DLL1O00548 723 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 TREHO43280 583 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 FIBPO43427 364 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 ARHGEF15O94989 841 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 F2P00734 622 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 SMIM10L2AP0DMW4 78 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 SMIM10L2BP0DMW5 78 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 CKBP12277 381 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 ATP2A2P16615 1042 aaKnown RBP11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 METAP2P50579 478 aaKnown RBP eCLIP11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 IGBP1P78318 339 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms