RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 A0A1B0GVL5 298 aa11.86□□□□□ -0.51
VPS4B-204ENST00000589604 ADCY3O60266 1144 aa11.86□□□□□ -0.51
VPS4B-204ENST00000589604 RGS2P41220 211 aa11.86□□□□□ -0.51
VPS4B-204ENST00000589604 NDUFA8P51970 172 aa11.86□□□□□ -0.51
VPS4B-204ENST00000589604 ZNF445P59923 1031 aa11.86□□□□□ -0.51
VPS4B-204ENST00000589604 FAM160A1Q05DH4 1040 aa11.86□□□□□ -0.51
VPS4B-204ENST00000589604 CCDC183Q5T5S1 534 aa11.86□□□□□ -0.51
VPS4B-204ENST00000589604 NEK8Q86SG6 692 aa11.86□□□□□ -0.51
VPS4B-204ENST00000589604 DPP9Q86TI2 863 aa11.86□□□□□ -0.51
VPS4B-204ENST00000589604 GAS2L3Q86XJ1 694 aa11.86□□□□□ -0.51
VPS4B-204ENST00000589604 TEX2Q8IWB9 1127 aa11.86□□□□□ -0.51
VPS4B-204ENST00000589604 ZNF579Q8NAF0 562 aaKnown RBP11.86□□□□□ -0.51
VPS4B-204ENST00000589604 POTEB2H3BUK9 544 aa11.85□□□□□ -0.51
VPS4B-204ENST00000589604 XRCC5P13010 732 aaKnown RBP11.85□□□□□ -0.51
VPS4B-204ENST00000589604 HOXD10P28358 340 aa11.85□□□□□ -0.51
VPS4B-204ENST00000589604 CYP2C19P33261 490 aa11.85□□□□□ -0.51
VPS4B-204ENST00000589604 NUBP1P53384 320 aa11.85□□□□□ -0.51
VPS4B-204ENST00000589604 TRAF1Q13077 416 aa11.85□□□□□ -0.51
VPS4B-204ENST00000589604 LETM2Q2VYF4 491 aa11.85□□□□□ -0.51
VPS4B-204ENST00000589604 USP49Q70CQ1 688 aa11.85□□□□□ -0.51
VPS4B-204ENST00000589604 ANO3Q9BYT9 981 aa11.85□□□□□ -0.51
VPS4B-204ENST00000589604 CSRNP2Q9H175 543 aa11.85□□□□□ -0.51
VPS4B-204ENST00000589604 CLSTN2Q9H4D0 955 aa11.85□□□□□ -0.51
VPS4B-204ENST00000589604 DDX19AQ9NUU7 478 aaKnown RBP11.85□□□□□ -0.51
VPS4B-204ENST00000589604 PNMA2Q9UL42 364 aa11.85□□□□□ -0.51
VPS4B-204ENST00000589604 PFASO15067 1338 aa11.85□□□□□ -0.51
VPS4B-204ENST00000589604 PFKFB1P16118 471 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 AP3B2Q13367 1082 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 ARHGEF6Q15052 776 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 SPECC1Q5M775 1068 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 PRAMEF19Q5SWL8 479 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 ARL6IP4Q66PJ3 421 aaKnown RBP11.84□□□□□ -0.51
VPS4B-204ENST00000589604 FBXO46Q6PJ61 603 aaPredicted RBP11.84□□□□□ -0.51
VPS4B-204ENST00000589604 RBM43Q6ZSC3 357 aaKnown RBP11.84□□□□□ -0.51
VPS4B-204ENST00000589604 TRPV1Q8NER1 839 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 IL31RAQ8NI17 732 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 RAET1EQ8TD07 263 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 FERMT2Q96AC1 680 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 MBOAT7Q96N66 472 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 CYP3A7-CYP3A51PA0A087WV96 503 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 SYCE3A1L190 88 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 GCOM1H8Y6P7 765 aaPredicted RBP11.84□□□□□ -0.51
VPS4B-204ENST00000589604 SLC37A4O43826 429 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 CCNT1O60563 726 aaKnown RBP11.84□□□□□ -0.51
VPS4B-204ENST00000589604 TDP2O95551 362 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 SNAI1O95863 264 aaPredicted RBP11.84□□□□□ -0.51
VPS4B-204ENST00000589604 FOSP01100 380 aaPredicted RBP11.84□□□□□ -0.51
VPS4B-204ENST00000589604 POLR2MP0CAP2 368 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 CYP3A7P24462 503 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 GRK4P32298 578 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 ALDH5A1P51649 535 aaPredicted RBP11.84□□□□□ -0.51
VPS4B-204ENST00000589604 PRMT2P55345 433 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 UBXN2AP68543 259 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 ORC2Q13416 577 aaPredicted RBP11.84□□□□□ -0.51
VPS4B-204ENST00000589604 MCTP2Q6DN12 878 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 PPP4R3AQ6IN85 833 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 FCHSD1Q86WN1 690 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 MCF2L2Q86YR7 1114 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 ZFP91Q96JP5 570 aaPredicted RBP11.84□□□□□ -0.51
VPS4B-204ENST00000589604 MTMR9Q96QG7 549 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 KATNBL1Q9H079 304 aa11.84□□□□□ -0.51
VPS4B-204ENST00000589604 DIS3Q9Y2L1 958 aaKnown RBP11.84□□□□□ -0.51
VPS4B-204ENST00000589604 A0A087X0B3 334 aa11.83□□□□□ -0.52
VPS4B-204ENST00000589604 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.83□□□□□ -0.52
VPS4B-204ENST00000589604 FSD2A1L4K1 749 aa11.83□□□□□ -0.52
VPS4B-204ENST00000589604 ZNF202O95125 648 aa11.83□□□□□ -0.52
VPS4B-204ENST00000589604 SREBF1P36956 1147 aa11.83□□□□□ -0.52
VPS4B-204ENST00000589604 PRPHP41219 470 aa11.83□□□□□ -0.52
VPS4B-204ENST00000589604 USP11P51784 963 aa11.83□□□□□ -0.52
VPS4B-204ENST00000589604 CACNB2Q08289 660 aaPredicted RBP11.83□□□□□ -0.52
VPS4B-204ENST00000589604 OLFML2BQ68BL8 750 aa11.83□□□□□ -0.52
VPS4B-204ENST00000589604 MAMDC4Q6UXC1 1216 aa11.83□□□□□ -0.52
VPS4B-204ENST00000589604 CCDC73Q6ZRK6 1079 aa11.83□□□□□ -0.52
VPS4B-204ENST00000589604 PXYLP1Q8TE99 480 aa11.83□□□□□ -0.52
VPS4B-204ENST00000589604 SYAP1Q96A49 352 aaPredicted RBP11.83□□□□□ -0.52
VPS4B-204ENST00000589604 EPSTI1Q96J88 318 aa11.83□□□□□ -0.52
VPS4B-204ENST00000589604 TINF2Q9BSI4 451 aa11.83□□□□□ -0.52
VPS4B-204ENST00000589604 FUCA2Q9BTY2 467 aa11.83□□□□□ -0.52
VPS4B-204ENST00000589604 NUP62CLQ9H1M0 184 aa11.83□□□□□ -0.52
VPS4B-204ENST00000589604 FRMPD4Q14CM0 1322 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 RPTORQ8N122 1335 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 VWA3AA6NCI4 1184 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 LAD1O00515 517 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 NEMFO60524 1076 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 MYCP01106 439 aaPredicted RBP11.82□□□□□ -0.52
VPS4B-204ENST00000589604 INHAP05111 366 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 CYP3A4P08684 503 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 EIF2AK2P19525 551 aaKnown RBP11.82□□□□□ -0.52
VPS4B-204ENST00000589604 PTGS1P23219 599 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 EDNRBP24530 442 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 ARHGAP4P98171 946 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 MTFR1Q15390 333 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 PKN2Q16513 984 aaKnown RBP11.82□□□□□ -0.52
VPS4B-204ENST00000589604 CAMK4Q16566 473 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 TMEM63BQ5T3F8 832 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 MAP3K21Q5TCX8 1036 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 ZNF467Q7Z7K2 595 aaPredicted RBP11.82□□□□□ -0.52
VPS4B-204ENST00000589604 SLAIN1Q8ND83 568 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 MORC4Q8TE76 937 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 RMDN3Q96TC7 470 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms