RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	BLOC1S4	Q9NUP1	217 aa		17.24	■□□□□ 0.35
DDX39A-209	ENST00000589318	IREB2	P48200	963 aa	Known RBP	17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	ZNF75D	P51815	510 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	ECM1	Q16610	540 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	TMEM119	Q4V9L6	283 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	DRC7	Q8IY82	874 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	SNX29	Q8TEQ0	813 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	CLMN	Q96JQ2	1002 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	MED15	Q96RN5	788 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	YY1AP1	Q9H869	796 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	TMOD4	Q9NZQ9	345 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	CSAD	Q9Y600	493 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	RPTOR	Q8N122	1335 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318		A0A0G2JMZ2	1700 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	IQCA1L	A6NCM1	817 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	MSH4	O15457	936 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	UBXN2A	P68543	259 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	IRX3	P78415	501 aa	Predicted RBP	17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	FMR1	Q06787	632 aa	Known RBP eCLIP	17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	COG2	Q14746	738 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	HYI	Q5T013	277 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	CALML4	Q96GE6	196 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	HOMER2	Q9NSB8	354 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	ZNF214	Q9UL59	606 aa	Predicted RBP	17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	RIPK3	Q9Y572	518 aa		17.23	■□□□□ 0.35
DDX39A-209	ENST00000589318	KLRC4	O43908	158 aa		17.22	■□□□□ 0.35
DDX39A-209	ENST00000589318	SLU7	O95391	586 aa	Known RBP	17.22	■□□□□ 0.35
DDX39A-209	ENST00000589318	RPN1	P04843	607 aa	Known RBP	17.22	■□□□□ 0.35
DDX39A-209	ENST00000589318	MYL1	P05976	194 aa		17.22	■□□□□ 0.35
DDX39A-209	ENST00000589318	CD44	P16070	742 aa	Known RBP	17.22	■□□□□ 0.35
DDX39A-209	ENST00000589318	MYL5	Q02045	173 aa		17.22	■□□□□ 0.35
DDX39A-209	ENST00000589318	EAPP	Q56P03	285 aa	Predicted RBP	17.22	■□□□□ 0.35
DDX39A-209	ENST00000589318	KRT79	Q5XKE5	535 aa		17.22	■□□□□ 0.35
DDX39A-209	ENST00000589318	MCF2L2	Q86YR7	1114 aa		17.22	■□□□□ 0.35
DDX39A-209	ENST00000589318	STK17A	Q9UEE5	414 aa		17.22	■□□□□ 0.35
DDX39A-209	ENST00000589318	PNMA2	Q9UL42	364 aa		17.22	■□□□□ 0.35
DDX39A-209	ENST00000589318	FRMPD4	Q14CM0	1322 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	MARCH6	O60337	910 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	STAT3	P40763	770 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	DHX8	Q14562	1220 aa	Known RBP	17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	PTPN14	Q15678	1187 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	KCNK18	Q7Z418	384 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	TXLNB	Q8N3L3	684 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	FAM20A	Q96MK3	541 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	TRERF1	Q96PN7	1200 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	ELP3	Q9H9T3	547 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	VAV3	Q9UKW4	847 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	MYPN	Q86TC9	1320 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	SPDYE16	A6NNV3	312 aa	Predicted RBP	17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	ATP2A1	O14983	1001 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	POTEI	P0CG38	1075 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	POTEJ	P0CG39	1038 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	CAPN2	P17655	700 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	NF2	P35240	595 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	OAZ1	P54368	228 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	TMEM132B	Q14DG7	1078 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	TREML2	Q5T2D2	321 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	NYAP1	Q6ZVC0	841 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	SMYD4	Q8IYR2	804 aa	Predicted RBP	17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	ANKRD13A	Q8IZ07	590 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	SAMD3	Q8N6K7	520 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	SYTL5	Q8TDW5	730 aa	Predicted RBP	17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	TRIM9	Q9C026	710 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	TRIM5	Q9C035	493 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	EHMT1	Q9H9B1	1298 aa		17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	MAP3K20	Q9NYL2	800 aa	Known RBP	17.21	■□□□□ 0.35
DDX39A-209	ENST00000589318	PPP1R3G	B7ZBB8	358 aa		17.2	■□□□□ 0.34
DDX39A-209	ENST00000589318	IRF6	O14896	467 aa		17.2	■□□□□ 0.34
DDX39A-209	ENST00000589318	ATP8B1	O43520	1251 aa		17.2	■□□□□ 0.34
DDX39A-209	ENST00000589318	ZNF76	P36508	570 aa		17.2	■□□□□ 0.34
DDX39A-209	ENST00000589318	RPS6	P62753	249 aa	Known RBP	17.2	■□□□□ 0.34
DDX39A-209	ENST00000589318	TPM4	P67936	248 aa		17.2	■□□□□ 0.34
DDX39A-209	ENST00000589318	PPAT	Q06203	517 aa		17.2	■□□□□ 0.34
DDX39A-209	ENST00000589318	CEP55	Q53EZ4	464 aa		17.2	■□□□□ 0.34
DDX39A-209	ENST00000589318	POTEE	Q6S8J3	1075 aa		17.2	■□□□□ 0.34
DDX39A-209	ENST00000589318	SLC30A10	Q6XR72	485 aa		17.2	■□□□□ 0.34
DDX39A-209	ENST00000589318	PNMA8A	Q86V59	439 aa	Predicted RBP	17.2	■□□□□ 0.34
DDX39A-209	ENST00000589318	IL31RA	Q8NI17	732 aa		17.2	■□□□□ 0.34
DDX39A-209	ENST00000589318	C7orf25	Q9BPX7	421 aa		17.2	■□□□□ 0.34
DDX39A-209	ENST00000589318	DACH1	Q9UI36	760 aa		17.2	■□□□□ 0.34
DDX39A-209	ENST00000589318	SPDYE5	A6NIY4	337 aa		17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	MEIS1	O00470	390 aa		17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	KCNB1	Q14721	858 aa		17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	CT47A1	Q5JQC4	288 aa	Predicted RBP	17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	ERO1B	Q86YB8	467 aa		17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	ENOX1	Q8TC92	643 aa	Known RBP	17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	RNF146	Q9NTX7	359 aa		17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	CTDP1	Q9Y5B0	961 aa	Predicted RBP	17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	LCT	P09848	1927 aa		17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318		A0A0G2JLL6	359 aa	Predicted RBP	17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	ERCC5	P28715	1186 aa	Predicted RBP	17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	MCM6	Q14566	821 aa		17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	ZNF658	Q5TYW1	1059 aa	Predicted RBP	17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	SNRNP48	Q6IEG0	339 aa	Known RBP	17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	FBXO38	Q6PIJ6	1188 aa		17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	PRRT2	Q7Z6L0	340 aa	Predicted RBP	17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	LARP4B	Q92615	738 aa	Known RBP	17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	RAD54L	Q92698	747 aa		17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	OTUD5	Q96G74	571 aa		17.19	■□□□□ 0.34
DDX39A-209	ENST00000589318	ZFP91	Q96JP5	570 aa	Predicted RBP	17.19	■□□□□ 0.34

Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms