RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 CDC37Q16543 378 aaPredicted RBP12.94□□□□□ -0.34
VPS4B-202ENST00000588059 GPATCH4Q5T3I0 446 aaKnown RBP12.94□□□□□ -0.34
VPS4B-202ENST00000588059 SAMD11Q96NU1 681 aa12.94□□□□□ -0.34
VPS4B-202ENST00000588059 IWS1Q96ST2 819 aa12.94□□□□□ -0.34
VPS4B-202ENST00000588059 RMDN3Q96TC7 470 aa12.94□□□□□ -0.34
VPS4B-202ENST00000588059 MAF1Q9H063 256 aa12.94□□□□□ -0.34
VPS4B-202ENST00000588059 PRKAG3Q9UGI9 489 aa12.94□□□□□ -0.34
VPS4B-202ENST00000588059 ABCB11O95342 1321 aa12.93□□□□□ -0.34
VPS4B-202ENST00000588059 TECTAO75443 2155 aa12.93□□□□□ -0.34
VPS4B-202ENST00000588059 FGAP02671 866 aa12.93□□□□□ -0.34
VPS4B-202ENST00000588059 MX1P20591 662 aa12.93□□□□□ -0.34
VPS4B-202ENST00000588059 GPM6BQ13491 265 aa12.93□□□□□ -0.34
VPS4B-202ENST00000588059 PLEKHG4Q58EX7 1191 aa12.93□□□□□ -0.34
VPS4B-202ENST00000588059 HFE2Q6ZVN8 426 aa12.93□□□□□ -0.34
VPS4B-202ENST00000588059 SERINC5Q86VE9 423 aa12.93□□□□□ -0.34
VPS4B-202ENST00000588059 ADHFE1Q8IWW8 467 aa12.93□□□□□ -0.34
VPS4B-202ENST00000588059 ANKS1AQ92625 1134 aa12.93□□□□□ -0.34
VPS4B-202ENST00000588059 TTC14Q96N46 770 aa12.93□□□□□ -0.34
VPS4B-202ENST00000588059 UBA5Q9GZZ9 404 aa12.93□□□□□ -0.34
VPS4B-202ENST00000588059 NSUN3Q9H649 340 aaKnown RBP12.93□□□□□ -0.34
VPS4B-202ENST00000588059 FAM50BQ9Y247 325 aa12.93□□□□□ -0.34
VPS4B-202ENST00000588059 MRVI1Q9Y6F6 885 aa12.93□□□□□ -0.34
VPS4B-202ENST00000588059 LAMA4Q16363 1823 aa12.92□□□□□ -0.34
VPS4B-202ENST00000588059 ZMYM6O95789 1325 aa12.92□□□□□ -0.34
VPS4B-202ENST00000588059 SALL3Q9BXA9 1300 aa12.92□□□□□ -0.34
VPS4B-202ENST00000588059 RSPH10B2B2RC85 870 aa12.92□□□□□ -0.34
VPS4B-202ENST00000588059 RSPH10BP0C881 870 aa12.92□□□□□ -0.34
VPS4B-202ENST00000588059 EIF2AK2P19525 551 aaKnown RBP12.92□□□□□ -0.34
VPS4B-202ENST00000588059 IRS1P35568 1242 aa12.92□□□□□ -0.34
VPS4B-202ENST00000588059 HAND2P61296 217 aa12.92□□□□□ -0.34
VPS4B-202ENST00000588059 LAMC2Q13753 1193 aa12.92□□□□□ -0.34
VPS4B-202ENST00000588059 EP400NLQ6ZTU2 488 aa12.92□□□□□ -0.34
VPS4B-202ENST00000588059 FBXO11Q86XK2 927 aa12.92□□□□□ -0.34
VPS4B-202ENST00000588059 TBC1D10CQ8IV04 446 aa12.92□□□□□ -0.34
VPS4B-202ENST00000588059 DHX37Q8IY37 1157 aaKnown RBP12.92□□□□□ -0.34
VPS4B-202ENST00000588059 TMEM192Q8IY95 271 aa12.92□□□□□ -0.34
VPS4B-202ENST00000588059 YME1L1Q96TA2 773 aa12.92□□□□□ -0.34
VPS4B-202ENST00000588059 C5orf42Q9H799 3197 aa12.92□□□□□ -0.34
VPS4B-202ENST00000588059 EIF3JO75822 258 aaKnown RBP12.91□□□□□ -0.34
VPS4B-202ENST00000588059 NR3C2P08235 984 aa12.91□□□□□ -0.34
VPS4B-202ENST00000588059 LTBRP36941 435 aa12.91□□□□□ -0.34
VPS4B-202ENST00000588059 THPOP40225 353 aa12.91□□□□□ -0.34
VPS4B-202ENST00000588059 ARHGEF16Q5VV41 709 aa12.91□□□□□ -0.34
VPS4B-202ENST00000588059 RPAINQ86UA6 219 aa12.91□□□□□ -0.34
VPS4B-202ENST00000588059 TOP1MTQ969P6 601 aa12.91□□□□□ -0.34
VPS4B-202ENST00000588059 OSBPL7Q9BZF2 842 aa12.91□□□□□ -0.34
VPS4B-202ENST00000588059 PXMP2Q9NR77 195 aa12.91□□□□□ -0.34
VPS4B-202ENST00000588059 HELLSQ9NRZ9 838 aa12.91□□□□□ -0.34
VPS4B-202ENST00000588059 CLDND1Q9NY35 253 aa12.91□□□□□ -0.34
VPS4B-202ENST00000588059 TRIOO75962 3097 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 A0A0D9SFI3 127 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.9□□□□□ -0.34
VPS4B-202ENST00000588059 PPFIA4O75335 1185 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 RGS20O76081 388 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 UPP2O95045 317 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 PCP11498 1178 aaKnown RBP12.9□□□□□ -0.34
VPS4B-202ENST00000588059 HOXC8P31273 242 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 CTC1Q2NKJ3 1217 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 QRICH1Q2TAL8 776 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 HSDL1Q3SXM5 330 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 MYSM1Q5VVJ2 828 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 MCF2L2Q86YR7 1114 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 ADGRF4Q8IZF3 695 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 SEPT8Q92599 483 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 SNX27Q96L92 541 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 FAM227BQ96M60 508 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 ZKSCAN3Q9BRR0 538 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 C16orf70Q9BSU1 422 aa12.9□□□□□ -0.34
VPS4B-202ENST00000588059 NEDD4P46934 1319 aa12.89□□□□□ -0.35
VPS4B-202ENST00000588059 DOCK5Q9H7D0 1870 aa12.89□□□□□ -0.35
VPS4B-202ENST00000588059 OPLAHO14841 1288 aa12.89□□□□□ -0.35
VPS4B-202ENST00000588059 SORBS3O60504 671 aa12.89□□□□□ -0.35
VPS4B-202ENST00000588059 HSPD1P10809 573 aaKnown RBP12.89□□□□□ -0.35
VPS4B-202ENST00000588059 SMAD2Q15796 467 aaKnown RBP12.89□□□□□ -0.35
VPS4B-202ENST00000588059 CELF3Q5SZQ8 465 aaKnown RBP12.89□□□□□ -0.35
VPS4B-202ENST00000588059 MFSD6Q6ZSS7 791 aa12.89□□□□□ -0.35
VPS4B-202ENST00000588059 ZNF589Q86UQ0 364 aaPredicted RBP12.89□□□□□ -0.35
VPS4B-202ENST00000588059 PNMA1Q8ND90 353 aa12.89□□□□□ -0.35
VPS4B-202ENST00000588059 EVI5LQ96CN4 794 aa12.89□□□□□ -0.35
VPS4B-202ENST00000588059 SPATA33Q96N06 139 aa12.89□□□□□ -0.35
VPS4B-202ENST00000588059 PHOX2BQ99453 314 aa12.89□□□□□ -0.35
VPS4B-202ENST00000588059 IFIH1Q9BYX4 1025 aaKnown RBP12.89□□□□□ -0.35
VPS4B-202ENST00000588059 UPF3BQ9BZI7 483 aaKnown RBP12.89□□□□□ -0.35
VPS4B-202ENST00000588059 MUTYHQ9UIF7 546 aa12.89□□□□□ -0.35
VPS4B-202ENST00000588059 MRPL11Q9Y3B7 192 aaKnown RBP12.89□□□□□ -0.35
VPS4B-202ENST00000588059 C17orf102A2RUQ5 167 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 TREHO43280 583 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 MBTPS2O43462 519 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 NCK2O43639 380 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 GGPS1O95749 300 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 CFBP00751 764 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 CTSHP09668 335 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 LINC00271P0C7V0 271 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 UBA1P22314 1058 aaKnown RBP12.88□□□□□ -0.35
VPS4B-202ENST00000588059 CTNNB1P35222 781 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 HSD17B4P51659 736 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 GHRHRQ02643 423 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 DLX2Q07687 328 aaPredicted RBP12.88□□□□□ -0.35
VPS4B-202ENST00000588059 HYAL1Q12794 435 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 CLUL1Q15846 466 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms