RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 STIM1Q13586 685 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 PDIA5Q14554 519 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 KCTD2Q14681 263 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 CCL15Q16663 113 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 Q4G0T1 1027 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 NOM1Q5C9Z4 860 aaKnown RBP6.96□□□□□ -1.3
LIG3-206ENST00000586058 SPECC1Q5M775 1068 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 WDR78Q5VTH9 848 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 XRRA1Q6P2D8 792 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 LBX2Q6XYB7 198 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 NCAPG2Q86XI2 1143 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 PLA2G4DQ86XP0 818 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 ELOA2Q8IYF1 753 aaPredicted RBP6.96□□□□□ -1.3
LIG3-206ENST00000586058 TRIML1Q8N9V2 468 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 SMC1BQ8NDV3 1235 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 ENGASEQ8NFI3 743 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 WNK4Q96J92 1243 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 CDHR1Q96JP9 859 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 CLMNQ96JQ2 1002 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 FAM20AQ96MK3 541 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 PARK7Q99497 189 aaKnown RBP6.96□□□□□ -1.3
LIG3-206ENST00000586058 TEKT3Q9BXF9 490 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 CCSER1Q9C0I3 900 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 NMRK2Q9NPI5 230 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 SLC45A1Q9Y2W3 748 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 IVNS1ABPQ9Y6Y0 642 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 CASP8AP2Q9UKL3 1982 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 ZNF536O15090 1300 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 CYP3A7-CYP3A51PA0A087WV96 503 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 TESPA1A2RU30 521 aaPredicted RBP6.95□□□□□ -1.3
LIG3-206ENST00000586058 SMTNL1A8MU46 457 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 GOLGA6L6A8MZA4 724 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 TRAF5O00463 557 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 NFIBO00712 420 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 SLC37A4O43826 429 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 GAS7O60861 476 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 SLFN14P0C7P3 912 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 MYCLP12524 364 aaPredicted RBP6.95□□□□□ -1.3
LIG3-206ENST00000586058 CYP3A7P24462 503 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 CIITAP33076 1130 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 DEKP35659 375 aaKnown RBP6.95□□□□□ -1.3
LIG3-206ENST00000586058 CCT6AP40227 531 aaKnown RBP6.95□□□□□ -1.3
LIG3-206ENST00000586058 PPP1R2P41236 205 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 GCLCP48506 637 aaPredicted RBP6.95□□□□□ -1.3
LIG3-206ENST00000586058 HUNKP57058 714 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 GHRHRQ02643 423 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 SEMA3FQ13275 785 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 MTMR1Q13613 665 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 ANO6Q4KMQ2 910 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 CEP55Q53EZ4 464 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 TREML2Q5T2D2 321 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 LDLRAD1Q5T700 205 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 LRCH2Q5VUJ6 765 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 PCNX4Q63HM2 1172 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 NCAPH2Q6IBW4 605 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 RBM43Q6ZSC3 357 aaKnown RBP6.95□□□□□ -1.3
LIG3-206ENST00000586058 MOB2Q70IA6 237 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 NIPA1Q7RTP0 329 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 RIOX2Q8IUF8 465 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 KCTD17Q8N5Z5 321 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 IGSF22Q8N9C0 903 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 DNERQ8NFT8 737 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 FAM200AQ8TCP9 573 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 NEK9Q8TD19 979 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 NSUN6Q8TEA1 469 aaKnown RBP6.95□□□□□ -1.3
LIG3-206ENST00000586058 RMDN3Q96TC7 470 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 ZNF577Q9BSK1 485 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 SPATC1LQ9H0A9 340 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 ASCC2Q9H1I8 757 aaPredicted RBP6.95□□□□□ -1.3
LIG3-206ENST00000586058 KIAA1468Q9P260 1216 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 SERTAD1Q9UHV2 236 aa6.95□□□□□ -1.3
LIG3-206ENST00000586058 ZNF214Q9UL59 606 aaPredicted RBP6.95□□□□□ -1.3
LIG3-206ENST00000586058 KAT6AQ92794 2004 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 MANSC4A6NHS7 340 aaPredicted RBP6.94□□□□□ -1.3
LIG3-206ENST00000586058 STK25O00506 426 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 WNT7AO00755 349 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 DKC1O60832 514 aaKnown RBP eCLIP6.94□□□□□ -1.3
LIG3-206ENST00000586058 KRT18P05783 430 aaKnown RBP6.94□□□□□ -1.3
LIG3-206ENST00000586058 BCRP11274 1271 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 EIF2AK2P19525 551 aaKnown RBP6.94□□□□□ -1.3
LIG3-206ENST00000586058 AFMP43652 599 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 ZNF165P49910 485 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 ZNF157P51786 506 aaPredicted RBP6.94□□□□□ -1.3
LIG3-206ENST00000586058 NLRP12P59046 1061 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 RPS6P62753 249 aaKnown RBP6.94□□□□□ -1.3
LIG3-206ENST00000586058 UBXN2AP68543 259 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 PDE4DQ08499 809 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 SREBF2Q12772 1141 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 PNOCQ13519 176 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 TMEM132BQ14DG7 1078 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 KARSQ15046 597 aaKnown RBP6.94□□□□□ -1.3
LIG3-206ENST00000586058 PGM5Q15124 567 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 TPD52L1Q16890 204 aaPredicted RBP6.94□□□□□ -1.3
LIG3-206ENST00000586058 UVSSAQ2YD98 709 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 MUM1L1Q5H9M0 696 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 SLC30A10Q6XR72 485 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 PAXIP1Q6ZW49 1069 aaPredicted RBP6.94□□□□□ -1.3
LIG3-206ENST00000586058 SV2BQ7L1I2 683 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 ANKRD23Q86SG2 305 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 ZNF687Q8N1G0 1237 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms