RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 ITGB6P18564 788 aa5.66□□□□□ -1.5
SMCHD1-209ENST00000583441 MRPS21P82921 87 aaKnown RBP5.66□□□□□ -1.5
SMCHD1-209ENST00000583441 POU4F1Q01851 419 aa5.66□□□□□ -1.5
SMCHD1-209ENST00000583441 RBBP8NLQ8NC74 664 aaPredicted RBP5.66□□□□□ -1.5
SMCHD1-209ENST00000583441 SLC6A18Q96N87 628 aa5.66□□□□□ -1.5
SMCHD1-209ENST00000583441 GNRHR2Q96P88 292 aa5.66□□□□□ -1.5
SMCHD1-209ENST00000583441 CNNM2Q9H8M5 875 aa5.66□□□□□ -1.5
SMCHD1-209ENST00000583441 ZNF408Q9H9D4 720 aa5.66□□□□□ -1.5
SMCHD1-209ENST00000583441 PRKAG3Q9UGI9 489 aa5.66□□□□□ -1.5
SMCHD1-209ENST00000583441 SIT1Q9Y3P8 196 aa5.66□□□□□ -1.5
SMCHD1-209ENST00000583441 R3HCC1Q9Y3T6 440 aaKnown RBP5.66□□□□□ -1.5
SMCHD1-209ENST00000583441 PCDHB14Q9Y5E9 798 aa5.66□□□□□ -1.5
SMCHD1-209ENST00000583441 RAMP2O60895 175 aa5.65□□□□□ -1.5
SMCHD1-209ENST00000583441 FBLP22087 321 aaKnown RBP5.65□□□□□ -1.5
SMCHD1-209ENST00000583441 GIPRP48546 466 aa5.65□□□□□ -1.5
SMCHD1-209ENST00000583441 FBXW10Q5XX13 1052 aa5.65□□□□□ -1.5
SMCHD1-209ENST00000583441 TCTN3Q6NUS6 607 aa5.65□□□□□ -1.5
SMCHD1-209ENST00000583441 GK5Q6ZS86 529 aa5.65□□□□□ -1.5
SMCHD1-209ENST00000583441 C7orf61Q8IZ16 206 aa5.65□□□□□ -1.5
SMCHD1-209ENST00000583441 KLHL36Q8N4N3 616 aa5.65□□□□□ -1.5
SMCHD1-209ENST00000583441 EDAQ92838 391 aa5.65□□□□□ -1.5
SMCHD1-209ENST00000583441 ANAPC16Q96DE5 110 aa5.65□□□□□ -1.5
SMCHD1-209ENST00000583441 SHDQ96IW2 340 aa5.65□□□□□ -1.5
SMCHD1-209ENST00000583441 PLEKHG4BQ96PX9 1271 aa5.65□□□□□ -1.5
SMCHD1-209ENST00000583441 PPT2Q9UMR5 302 aa5.65□□□□□ -1.5
SMCHD1-209ENST00000583441 MEIS3P2A8K0S8 358 aa5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 U2SURPO15042 1029 aaKnown RBP5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 PLSCR1O15162 318 aa5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 BMP5P22003 454 aa5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 KRTAP10-7P60409 375 aaPredicted RBP5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 CLCQ05315 142 aa5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 NOL9Q5SY16 702 aaKnown RBP5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 DPH6Q7L8W6 267 aa5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 MIB1Q86YT6 1006 aa5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 C1orf210Q8IVY1 113 aa5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 C19orf47Q8N9M1 422 aaKnown RBP5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 GIMAP8Q8ND71 665 aaPredicted RBP5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 LARP4BQ92615 738 aaKnown RBP5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 ATG4CQ96DT6 458 aa5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 TRIM55Q9BYV6 548 aa5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 OSBPL2Q9H1P3 480 aa5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 BARX1Q9HBU1 254 aaPredicted RBP5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 SHROOM4Q9ULL8 1493 aa5.64□□□□□ -1.51
SMCHD1-209ENST00000583441 CYP7B1O75881 506 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 C1SP09871 688 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 IFNGR1P15260 489 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 MAKP20794 623 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 NFATC3Q12968 1075 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 NFE2L2Q16236 605 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 CCDC81Q6ZN84 652 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 ANKS3Q6ZW76 656 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 NLRC3Q7RTR2 1065 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 NOP9Q86U38 636 aaKnown RBP5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 TAB3Q8N5C8 712 aaPredicted RBP5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 PMFBP1Q8TBY8 1022 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 TM9SF2Q99805 663 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 MTA3Q9BTC8 594 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 MMRN2Q9H8L6 949 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 SEC61A2Q9H9S3 476 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 NGRNQ9NPE2 291 aaKnown RBP5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 SIRPGQ9P1W8 387 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 GULP1Q9UBP9 304 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 FTSJ1Q9UET6 329 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 SLC12A7Q9Y666 1083 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 MRVI1Q9Y6F6 885 aa5.63□□□□□ -1.51
SMCHD1-209ENST00000583441 NTRK1P04629 796 aa5.62□□□□□ -1.51
SMCHD1-209ENST00000583441 CD3EP07766 207 aa5.62□□□□□ -1.51
SMCHD1-209ENST00000583441 ETFBP38117 255 aa5.62□□□□□ -1.51
SMCHD1-209ENST00000583441 ADAM9Q13443 819 aa5.62□□□□□ -1.51
SMCHD1-209ENST00000583441 KRTAP5-11Q6L8G4 156 aa5.62□□□□□ -1.51
SMCHD1-209ENST00000583441 DCP2Q8IU60 420 aaKnown RBP5.62□□□□□ -1.51
SMCHD1-209ENST00000583441 MKL1Q969V6 931 aa5.62□□□□□ -1.51
SMCHD1-209ENST00000583441 ACTR10Q9NZ32 417 aa5.62□□□□□ -1.51
SMCHD1-209ENST00000583441 KLF4O43474 513 aa5.61□□□□□ -1.51
SMCHD1-209ENST00000583441 PPP1R11O60927 126 aaPredicted RBP5.61□□□□□ -1.51
SMCHD1-209ENST00000583441 COMTP21964 271 aa5.61□□□□□ -1.51
SMCHD1-209ENST00000583441 MLLT6P55198 1093 aaPredicted RBP5.61□□□□□ -1.51
SMCHD1-209ENST00000583441 CASP7P55210 303 aa5.61□□□□□ -1.51
SMCHD1-209ENST00000583441 TUBA3CQ13748 450 aa5.61□□□□□ -1.51
SMCHD1-209ENST00000583441 RAB33AQ14088 237 aa5.61□□□□□ -1.51
SMCHD1-209ENST00000583441 AGBL4Q5VU57 503 aa5.61□□□□□ -1.51
SMCHD1-209ENST00000583441 TUBA3EQ6PEY2 450 aa5.61□□□□□ -1.51
SMCHD1-209ENST00000583441 LRP10Q7Z4F1 713 aa5.61□□□□□ -1.51
SMCHD1-209ENST00000583441 CCDC144CPQ8IYA2 1237 aa5.61□□□□□ -1.51
SMCHD1-209ENST00000583441 BRF1Q92994 677 aa5.61□□□□□ -1.51
SMCHD1-209ENST00000583441 LMF1Q96S06 567 aa5.61□□□□□ -1.51
SMCHD1-209ENST00000583441 AP5M1Q9H0R1 490 aa5.61□□□□□ -1.51
SMCHD1-209ENST00000583441 SMAD7O15105 426 aaKnown RBP5.6□□□□□ -1.51
SMCHD1-209ENST00000583441 GUCY2CP25092 1073 aa5.6□□□□□ -1.51
SMCHD1-209ENST00000583441 CANXP27824 592 aaKnown RBP5.6□□□□□ -1.51
SMCHD1-209ENST00000583441 SERINC3Q13530 473 aa5.6□□□□□ -1.51
SMCHD1-209ENST00000583441 CCDC144BQ3MJ40 725 aa5.6□□□□□ -1.51
SMCHD1-209ENST00000583441 ZKSCAN2Q63HK3 967 aa5.6□□□□□ -1.51
SMCHD1-209ENST00000583441 PCSK4Q6UW60 755 aa5.6□□□□□ -1.51
SMCHD1-209ENST00000583441 ZNF483Q8TF39 744 aaPredicted RBP5.6□□□□□ -1.51
SMCHD1-209ENST00000583441 ZSWIM3Q96MP5 696 aa5.6□□□□□ -1.51
SMCHD1-209ENST00000583441 CLIC6Q96NY7 704 aa5.6□□□□□ -1.51
SMCHD1-209ENST00000583441 LRRC37BQ96QE4 947 aa5.6□□□□□ -1.51
SMCHD1-209ENST00000583441 SF3B6Q9Y3B4 125 aaKnown RBP5.6□□□□□ -1.51
SMCHD1-209ENST00000583441 CNOT4O95628 575 aaKnown RBP5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms