RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 PI4KBQ9UBF8 816 aa12.06□□□□□ -0.48
SS18-221ENST00000582448 MORF4L1Q9UBU8 362 aa12.06□□□□□ -0.48
SS18-221ENST00000582448 DOCK2Q92608 1830 aa12.06□□□□□ -0.48
SS18-221ENST00000582448 GNB5O14775 395 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 ALAS2P22557 587 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 MCM2P49736 904 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 HERVK_113P62684 666 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 JAG1P78504 1218 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 CCINQ13939 588 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 NAA30Q147X3 362 aaPredicted RBP12.05□□□□□ -0.48
SS18-221ENST00000582448 SHROOM1Q2M3G4 852 aaPredicted RBP12.05□□□□□ -0.48
SS18-221ENST00000582448 WDR78Q5VTH9 848 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 MAPKAPK5Q8IW41 473 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 CRACR2BQ8N4Y2 399 aaPredicted RBP12.05□□□□□ -0.48
SS18-221ENST00000582448 TGFBRAP1Q8WUH2 860 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 SOCS4Q8WXH5 440 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 COL26A1Q96A83 441 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 TRIM11Q96F44 468 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 SENP6Q9GZR1 1112 aaPredicted RBP12.05□□□□□ -0.48
SS18-221ENST00000582448 HELLSQ9NRZ9 838 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 AATFQ9NY61 560 aaKnown RBP eCLIP12.05□□□□□ -0.48
SS18-221ENST00000582448 HERC5Q9UII4 1024 aaKnown RBP12.05□□□□□ -0.48
SS18-221ENST00000582448 DOCK1Q14185 1865 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 LAMA3Q16787 3333 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 ALPK3Q96L96 1907 aa12.05□□□□□ -0.48
SS18-221ENST00000582448 KRBA1A5PL33 1030 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 RNF113AO15541 343 aaKnown RBP12.04□□□□□ -0.48
SS18-221ENST00000582448 XRCC5P13010 732 aaKnown RBP12.04□□□□□ -0.48
SS18-221ENST00000582448 CNGA1P29973 690 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 MAPK4P31152 587 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 HSPA4P34932 840 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 RGS2P41220 211 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 ERVK-24P63145 666 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 ZYXQ15942 572 aaKnown RBP12.04□□□□□ -0.48
SS18-221ENST00000582448 PLA2G4EQ3MJ16 856 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 MCMDC2Q4G0Z9 681 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 MAP3K21Q5TCX8 1036 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 C16orf46Q6P387 395 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 GPR142Q7Z601 462 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 PLEKHH3Q7Z736 793 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 TREML1Q86YW5 311 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 ETFBKMTQ8IXQ9 262 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 FAM227BQ96M60 508 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 LBHD1Q9BQE6 289 aaPredicted RBP12.04□□□□□ -0.48
SS18-221ENST00000582448 WDR18Q9BV38 432 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 LSG1Q9H089 658 aaKnown RBP12.04□□□□□ -0.48
SS18-221ENST00000582448 PORCNQ9H237 461 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 RBPJLQ9UBG7 517 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 SAP30BPQ9UHR5 308 aaKnown RBP12.04□□□□□ -0.48
SS18-221ENST00000582448 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.04□□□□□ -0.48
SS18-221ENST00000582448 PDS5AQ29RF7 1337 aaKnown RBP12.04□□□□□ -0.48
SS18-221ENST00000582448 CCDC171Q6TFL3 1326 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 PHIPQ8WWQ0 1821 aa12.04□□□□□ -0.48
SS18-221ENST00000582448 C19orf81C9J6K1 198 aa12.03□□□□□ -0.48
SS18-221ENST00000582448 K7ELQ4 463 aaPredicted RBP12.03□□□□□ -0.48
SS18-221ENST00000582448 TNFRSF10BO14763 440 aa12.03□□□□□ -0.48
SS18-221ENST00000582448 BAG3O95817 575 aa12.03□□□□□ -0.48
SS18-221ENST00000582448 ASNSP08243 561 aa12.03□□□□□ -0.48
SS18-221ENST00000582448 NFKB1P19838 968 aa12.03□□□□□ -0.48
SS18-221ENST00000582448 HOXA7P31268 230 aaPredicted RBP12.03□□□□□ -0.48
SS18-221ENST00000582448 TBC1D8BQ0IIM8 1120 aa12.03□□□□□ -0.48
SS18-221ENST00000582448 NAA16Q6N069 864 aaPredicted RBP12.03□□□□□ -0.48
SS18-221ENST00000582448 C8orf86Q6ZUL3 223 aa12.03□□□□□ -0.48
SS18-221ENST00000582448 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.03□□□□□ -0.48
SS18-221ENST00000582448 EDC3Q96F86 508 aaKnown RBP12.03□□□□□ -0.48
SS18-221ENST00000582448 KIF2CQ99661 725 aa12.03□□□□□ -0.48
SS18-221ENST00000582448 DHX36Q9H2U1 1008 aaKnown RBP12.03□□□□□ -0.48
SS18-221ENST00000582448 PALD1Q9ULE6 856 aa12.03□□□□□ -0.48
SS18-221ENST00000582448 PTPRFP10586 1907 aa12.03□□□□□ -0.48
SS18-221ENST00000582448 A0A0D9SFI3 127 aa12.02□□□□□ -0.49
SS18-221ENST00000582448 ALBP02768 609 aa12.02□□□□□ -0.49
SS18-221ENST00000582448 COL6A1P12109 1028 aa12.02□□□□□ -0.49
SS18-221ENST00000582448 EPB42P16452 691 aa12.02□□□□□ -0.49
SS18-221ENST00000582448 PSMA5P28066 241 aa12.02□□□□□ -0.49
SS18-221ENST00000582448 ARID4AP29374 1257 aaPredicted RBP12.02□□□□□ -0.49
SS18-221ENST00000582448 MCAMP43121 646 aa12.02□□□□□ -0.49
SS18-221ENST00000582448 ZAP70P43403 619 aa12.02□□□□□ -0.49
SS18-221ENST00000582448 NEK4P51957 841 aa12.02□□□□□ -0.49
SS18-221ENST00000582448 COL9A3Q14050 684 aaPredicted RBP12.02□□□□□ -0.49
SS18-221ENST00000582448 KRT25Q7Z3Z0 450 aa12.02□□□□□ -0.49
SS18-221ENST00000582448 FOXP4Q8IVH2 680 aaPredicted RBP12.02□□□□□ -0.49
SS18-221ENST00000582448 IGFLR1Q9H665 355 aa12.02□□□□□ -0.49
SS18-221ENST00000582448 ZFATQ9P243 1243 aa12.02□□□□□ -0.49
SS18-221ENST00000582448 A0A0C4DFX4 3053 aa12.02□□□□□ -0.49
SS18-221ENST00000582448 DDX60LQ5H9U9 1706 aaKnown RBP12.01□□□□□ -0.49
SS18-221ENST00000582448 M0R082 166 aa12.01□□□□□ -0.49
SS18-221ENST00000582448 ATP2B2Q01814 1243 aa12.01□□□□□ -0.49
SS18-221ENST00000582448 MAP3K12Q12852 859 aa12.01□□□□□ -0.49
SS18-221ENST00000582448 KRT32Q14532 448 aa12.01□□□□□ -0.49
SS18-221ENST00000582448 MFSD14CQ5VZR4 134 aa12.01□□□□□ -0.49
SS18-221ENST00000582448 ZNF417Q8TAU3 575 aa12.01□□□□□ -0.49
SS18-221ENST00000582448 USP6NLQ92738 828 aa12.01□□□□□ -0.49
SS18-221ENST00000582448 GUCD1Q96NT3 240 aa12.01□□□□□ -0.49
SS18-221ENST00000582448 PNMA5Q96PV4 448 aa12.01□□□□□ -0.49
SS18-221ENST00000582448 ZNF587Q96SQ5 575 aaPredicted RBP12.01□□□□□ -0.49
SS18-221ENST00000582448 FEZ1Q99689 392 aa12.01□□□□□ -0.49
SS18-221ENST00000582448 APBA2Q99767 749 aa12.01□□□□□ -0.49
SS18-221ENST00000582448 DNAJC18Q9H819 358 aa12.01□□□□□ -0.49
SS18-221ENST00000582448 PRKAG2Q9UGJ0 569 aa12.01□□□□□ -0.49
SS18-221ENST00000582448 GH2P01242 217 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms