RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 YIPF4Q9BSR8 244 aa9.45□□□□□ -0.9
SS18-214ENST00000580003 MRPL4Q9BYD3 311 aaKnown RBP9.45□□□□□ -0.9
SS18-214ENST00000580003 KRTAP9-2Q9BYQ4 174 aa9.45□□□□□ -0.9
SS18-214ENST00000580003 IPPKQ9H8X2 491 aa9.45□□□□□ -0.9
SS18-214ENST00000580003 SLC6A20Q9NP91 592 aa9.45□□□□□ -0.9
SS18-214ENST00000580003 SFMBT1Q9UHJ3 866 aa9.45□□□□□ -0.9
SS18-214ENST00000580003 PCDHA8Q9Y5H6 950 aa9.45□□□□□ -0.9
SS18-214ENST00000580003 TADA3O75528 432 aa9.44□□□□□ -0.9
SS18-214ENST00000580003 ATF2P15336 505 aa9.44□□□□□ -0.9
SS18-214ENST00000580003 IGFBP6P24592 240 aaPredicted RBP9.44□□□□□ -0.9
SS18-214ENST00000580003 CNKSR3Q6P9H4 555 aa9.44□□□□□ -0.9
SS18-214ENST00000580003 ETV3LQ6ZN32 361 aa9.44□□□□□ -0.9
SS18-214ENST00000580003 OTOP3Q7RTS5 596 aa9.44□□□□□ -0.9
SS18-214ENST00000580003 LRRC56Q8IYG6 542 aaPredicted RBP9.44□□□□□ -0.9
SS18-214ENST00000580003 PIP4K2CQ8TBX8 421 aa9.44□□□□□ -0.9
SS18-214ENST00000580003 PHOSPHO1Q8TCT1 267 aa9.44□□□□□ -0.9
SS18-214ENST00000580003 DDX11Q96FC9 970 aa9.44□□□□□ -0.9
SS18-214ENST00000580003 SMOC1Q9H4F8 434 aa9.44□□□□□ -0.9
SS18-214ENST00000580003 SLC52A2Q9HAB3 445 aa9.44□□□□□ -0.9
SS18-214ENST00000580003 NUB1Q9Y5A7 615 aa9.44□□□□□ -0.9
SS18-214ENST00000580003 PCDHA9Q9Y5H5 950 aa9.44□□□□□ -0.9
SS18-214ENST00000580003 CRTAMO95727 393 aa9.43□□□□□ -0.9
SS18-214ENST00000580003 MC3RP41968 323 aa9.43□□□□□ -0.9
SS18-214ENST00000580003 LIMS1P48059 325 aa9.43□□□□□ -0.9
SS18-214ENST00000580003 FOXO4P98177 505 aa9.43□□□□□ -0.9
SS18-214ENST00000580003 CACNB2Q08289 660 aaPredicted RBP9.43□□□□□ -0.9
SS18-214ENST00000580003 SQSTM1Q13501 440 aa9.43□□□□□ -0.9
SS18-214ENST00000580003 CYP4F22Q6NT55 531 aa9.43□□□□□ -0.9
SS18-214ENST00000580003 TMEFF1Q8IYR6 380 aa9.43□□□□□ -0.9
SS18-214ENST00000580003 NLGN1Q8N2Q7 840 aa9.43□□□□□ -0.9
SS18-214ENST00000580003 KRTAP4-12Q9BQ66 201 aa9.43□□□□□ -0.9
SS18-214ENST00000580003 IRF2BPLQ9H1B7 796 aa9.43□□□□□ -0.9
SS18-214ENST00000580003 MYOTQ9UBF9 498 aa9.43□□□□□ -0.9
SS18-214ENST00000580003 COL6A2P12110 1019 aa9.42□□□□□ -0.9
SS18-214ENST00000580003 CFPP27918 469 aa9.42□□□□□ -0.9
SS18-214ENST00000580003 TRIM61Q5EBN2 209 aa9.42□□□□□ -0.9
SS18-214ENST00000580003 B3GNT8Q7Z7M8 397 aa9.42□□□□□ -0.9
SS18-214ENST00000580003 ZC3H18Q86VM9 953 aaKnown RBP9.42□□□□□ -0.9
SS18-214ENST00000580003 FAM129CQ86XR2 697 aa9.42□□□□□ -0.9
SS18-214ENST00000580003 MIB1Q86YT6 1006 aa9.42□□□□□ -0.9
SS18-214ENST00000580003 TMEM151BQ8IW70 566 aa9.42□□□□□ -0.9
SS18-214ENST00000580003 FAM126BQ8IXS8 530 aa9.42□□□□□ -0.9
SS18-214ENST00000580003 MAGEB10Q96LZ2 347 aaPredicted RBP9.42□□□□□ -0.9
SS18-214ENST00000580003 NCOA5Q9HCD5 579 aaKnown RBP9.42□□□□□ -0.9
SS18-214ENST00000580003 TCRBV5S2A0A599 114 aa9.41□□□□□ -0.9
SS18-214ENST00000580003 PLD2O14939 933 aa9.41□□□□□ -0.9
SS18-214ENST00000580003 SRGAP2CP0DJJ0 459 aa9.41□□□□□ -0.9
SS18-214ENST00000580003 KRTAP19-1Q8IUB9 90 aa9.41□□□□□ -0.9
SS18-214ENST00000580003 CILP2Q8IUL8 1156 aa9.41□□□□□ -0.9
SS18-214ENST00000580003 ZC3H7AQ8IWR0 971 aaKnown RBP9.41□□□□□ -0.9
SS18-214ENST00000580003 TRIM48Q8IWZ4 208 aa9.41□□□□□ -0.9
SS18-214ENST00000580003 GSTCDQ8NEC7 633 aa9.41□□□□□ -0.9
SS18-214ENST00000580003 PCDH19Q8TAB3 1148 aa9.41□□□□□ -0.9
SS18-214ENST00000580003 SLC7A14Q8TBB6 771 aa9.41□□□□□ -0.9
SS18-214ENST00000580003 PANK1Q8TE04 598 aa9.41□□□□□ -0.9
SS18-214ENST00000580003 FBXW5Q969U6 566 aa9.41□□□□□ -0.9
SS18-214ENST00000580003 RNPC3Q96LT9 517 aaKnown RBP9.41□□□□□ -0.9
SS18-214ENST00000580003 PWWP2AQ96N64 755 aa9.41□□□□□ -0.9
SS18-214ENST00000580003 KANSL2Q9H9L4 492 aa9.41□□□□□ -0.9
SS18-214ENST00000580003 NGRNQ9NPE2 291 aaKnown RBP9.41□□□□□ -0.9
SS18-214ENST00000580003 ARVCFO00192 962 aa9.4□□□□□ -0.9
SS18-214ENST00000580003 GSTA4O15217 222 aa9.4□□□□□ -0.9
SS18-214ENST00000580003 CYP2C8P10632 490 aa9.4□□□□□ -0.9
SS18-214ENST00000580003 ST5P78524 1137 aa9.4□□□□□ -0.9
SS18-214ENST00000580003 FAM47CQ5HY64 1035 aa9.4□□□□□ -0.9
SS18-214ENST00000580003 CD300LDQ6UXZ3 194 aa9.4□□□□□ -0.9
SS18-214ENST00000580003 SMARCC2Q8TAQ2 1214 aa9.4□□□□□ -0.9
SS18-214ENST00000580003 PCDH18Q9HCL0 1135 aa9.4□□□□□ -0.9
SS18-214ENST00000580003 EPB41L4AQ9HCS5 686 aaPredicted RBP9.4□□□□□ -0.9
SS18-214ENST00000580003 CATSPERZQ9NTU4 200 aa9.4□□□□□ -0.9
SS18-214ENST00000580003 TMEM260Q9NX78 707 aa9.4□□□□□ -0.9
SS18-214ENST00000580003 PMF1-BGLAPU3KQ54 211 aa9.4□□□□□ -0.9
SS18-214ENST00000580003 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.39□□□□□ -0.91
SS18-214ENST00000580003 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.39□□□□□ -0.91
SS18-214ENST00000580003 SLC27A2O14975 620 aa9.39□□□□□ -0.91
SS18-214ENST00000580003 AFF3P51826 1226 aaKnown RBP9.39□□□□□ -0.91
SS18-214ENST00000580003 TCERG1LQ5VWI1 586 aa9.39□□□□□ -0.91
SS18-214ENST00000580003 BRAPQ7Z569 592 aa9.39□□□□□ -0.91
SS18-214ENST00000580003 HOMER1Q86YM7 354 aa9.39□□□□□ -0.91
SS18-214ENST00000580003 ARRDC4Q8NCT1 418 aa9.39□□□□□ -0.91
SS18-214ENST00000580003 UHMK1Q8TAS1 419 aaKnown RBP9.39□□□□□ -0.91
SS18-214ENST00000580003 ASH2LQ9UBL3 628 aa9.39□□□□□ -0.91
SS18-214ENST00000580003 DSEQ9UL01 958 aa9.39□□□□□ -0.91
SS18-214ENST00000580003 KRTAP9-6A0A140TA67 174 aa9.38□□□□□ -0.91
SS18-214ENST00000580003 ESYT3A0FGR9 886 aa9.38□□□□□ -0.91
SS18-214ENST00000580003 WNT9AO14904 365 aa9.38□□□□□ -0.91
SS18-214ENST00000580003 NKRFO15226 690 aaKnown RBP eCLIP9.38□□□□□ -0.91
SS18-214ENST00000580003 RAPGEF3O95398 923 aa9.38□□□□□ -0.91
SS18-214ENST00000580003 C8BP07358 591 aa9.38□□□□□ -0.91
SS18-214ENST00000580003 STAT5AP42229 794 aa9.38□□□□□ -0.91
SS18-214ENST00000580003 NKX3-2P78367 333 aa9.38□□□□□ -0.91
SS18-214ENST00000580003 FNDC3BQ53EP0 1204 aaKnown RBP9.38□□□□□ -0.91
SS18-214ENST00000580003 C16orf59Q7L2K0 433 aa9.38□□□□□ -0.91
SS18-214ENST00000580003 NOP9Q86U38 636 aaKnown RBP9.38□□□□□ -0.91
SS18-214ENST00000580003 TOE1Q96GM8 510 aaKnown RBP9.38□□□□□ -0.91
SS18-214ENST00000580003 DTLQ9NZJ0 730 aa9.38□□□□□ -0.91
SS18-214ENST00000580003 KCNQ2O43526 872 aa9.37□□□□□ -0.91
SS18-214ENST00000580003 RASGRP1O95267 797 aa9.37□□□□□ -0.91
SS18-214ENST00000580003 ASMTLO95671 621 aa9.37□□□□□ -0.91
SS18-214ENST00000580003 PYGMP11217 842 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms