RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 PANK4Q9NVE7 773 aa25.25■■□□□ 1.63
VPS53-211ENST00000571805 CALCOCO1Q9P1Z2 691 aa25.25■■□□□ 1.63
VPS53-211ENST00000571805 ERCC3P19447 782 aa25.25■■□□□ 1.63
VPS53-211ENST00000571805 APOBEC3HQ6NTF7 200 aaKnown RBP25.25■■□□□ 1.63
VPS53-211ENST00000571805 CCDC155Q8N6L0 562 aa25.25■■□□□ 1.63
VPS53-211ENST00000571805 MLXIPQ9HAP2 919 aa25.25■■□□□ 1.63
VPS53-211ENST00000571805 SNX12Q9UMY4 172 aa25.25■■□□□ 1.63
VPS53-211ENST00000571805 SPATA31A6Q5VVP1 1343 aa25.25■■□□□ 1.63
VPS53-211ENST00000571805 MCM3P25205 808 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 FKBP3Q00688 224 aaKnown RBP25.24■■□□□ 1.63
VPS53-211ENST00000571805 ATP2B2Q01814 1243 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 ASTE1Q2TB18 679 aaPredicted RBP25.24■■□□□ 1.63
VPS53-211ENST00000571805 PDXDC1Q6P996 788 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 HHIPL2Q6UWX4 724 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 VPS18Q9P253 973 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 PCDHA2Q9Y5H9 948 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 ANKRD31Q8N7Z5 1873 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 MPHOSPH10O00566 681 aaKnown RBP25.24■■□□□ 1.63
VPS53-211ENST00000571805 FAM26FQ5R3K3 315 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 CREG2Q8IUH2 290 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 SEPT12Q8IYM1 358 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 ZBTB9Q96C00 473 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 FGFBP2Q9BYJ0 223 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 NT5C3AQ9H0P0 336 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 VIPAS39Q9H9C1 493 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 COL4A3BPQ9Y5P4 624 aa25.24■■□□□ 1.63
VPS53-211ENST00000571805 MARCH6O60337 910 aa25.23■■□□□ 1.63
VPS53-211ENST00000571805 TACC1O75410 805 aa25.23■■□□□ 1.63
VPS53-211ENST00000571805 NFIAQ12857 509 aa25.23■■□□□ 1.63
VPS53-211ENST00000571805 DEF6Q9H4E7 631 aa25.23■■□□□ 1.63
VPS53-211ENST00000571805 MYH10P35580 1976 aa25.23■■□□□ 1.63
VPS53-211ENST00000571805 E9PMD0 336 aa25.23■■□□□ 1.63
VPS53-211ENST00000571805 AKR1B10O60218 316 aa25.23■■□□□ 1.63
VPS53-211ENST00000571805 DOK7Q18PE1 504 aa25.23■■□□□ 1.63
VPS53-211ENST00000571805 SLC27A3Q5K4L6 730 aa25.23■■□□□ 1.63
VPS53-211ENST00000571805 HGSNATQ68CP4 663 aa25.23■■□□□ 1.63
VPS53-211ENST00000571805 CAGE1Q8TC20 777 aa25.23■■□□□ 1.63
VPS53-211ENST00000571805 NAP1L4Q99733 375 aaKnown RBP25.23■■□□□ 1.63
VPS53-211ENST00000571805 KDM3AQ9Y4C1 1321 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 USP17L15C9J2P7 530 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 USP17L13C9JLJ4 530 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 USP17L11C9JVI0 530 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 USP17L18D6R9N7 530 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 USP17L22D6RA61 530 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 USP17L17D6RBQ6 530 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 USP17L19D6RCP7 530 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 USP17L20D6RJB6 530 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 PJA2O43164 708 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 MOCS3O95396 460 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 HLA-DOAP06340 250 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 PRLRP16471 622 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 USP17L24Q0WX57 530 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 USP17L6PQ6QN14 398 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 ARHGAP27Q6ZUM4 889 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 ZFPM1Q8IX07 1006 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 EHD4Q9H223 541 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 DNAJC18Q9H819 358 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 KIAA1024Q9UPX6 916 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 FAN1Q9Y2M0 1017 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 TRAF5O00463 557 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 MAPK8IP2Q13387 824 aaPredicted RBP25.22■■□□□ 1.63
VPS53-211ENST00000571805 KCNMB3Q9NPA1 279 aa25.22■■□□□ 1.63
VPS53-211ENST00000571805 BMP2KQ9NSY1 1161 aaPredicted RBP25.22■■□□□ 1.63
VPS53-211ENST00000571805 QRICH1Q2TAL8 776 aa25.21■■□□□ 1.63
VPS53-211ENST00000571805 ZNF572Q7Z3I7 529 aaPredicted RBP25.21■■□□□ 1.63
VPS53-211ENST00000571805 CCDC17Q96LX7 622 aa25.21■■□□□ 1.63
VPS53-211ENST00000571805 TANGO6Q9C0B7 1094 aa25.21■■□□□ 1.63
VPS53-211ENST00000571805 EP400Q96L91 3159 aa25.21■■□□□ 1.63
VPS53-211ENST00000571805 NOL4O94818 638 aa25.2■■□□□ 1.63
VPS53-211ENST00000571805 PLA2G4BP0C869 781 aa25.2■■□□□ 1.63
VPS53-211ENST00000571805 MAGEA1P43355 309 aa25.2■■□□□ 1.63
VPS53-211ENST00000571805 GPIHBP1Q8IV16 184 aa25.2■■□□□ 1.63
VPS53-211ENST00000571805 FAM71BQ8TC56 605 aa25.2■■□□□ 1.63
VPS53-211ENST00000571805 TEKT1Q969V4 418 aa25.2■■□□□ 1.63
VPS53-211ENST00000571805 CEP63Q96MT8 703 aa25.2■■□□□ 1.63
VPS53-211ENST00000571805 UIMC1Q96RL1 719 aa25.2■■□□□ 1.63
VPS53-211ENST00000571805 SALL4Q9UJQ4 1053 aa25.2■■□□□ 1.63
VPS53-211ENST00000571805 CYP3A7-CYP3A51PA0A087WV96 503 aa25.2■■□□□ 1.62
VPS53-211ENST00000571805 SSU72P8A0A1W2PR75 194 aa25.2■■□□□ 1.62
VPS53-211ENST00000571805 SSBP05455 408 aaKnown RBP eCLIP25.2■■□□□ 1.62
VPS53-211ENST00000571805 CYP3A7P24462 503 aa25.2■■□□□ 1.62
VPS53-211ENST00000571805 USP11P51784 963 aa25.2■■□□□ 1.62
VPS53-211ENST00000571805 C2orf54Q08AI8 447 aa25.2■■□□□ 1.62
VPS53-211ENST00000571805 MAP9Q49MG5 647 aa25.2■■□□□ 1.62
VPS53-211ENST00000571805 CACNA2D4Q7Z3S7 1137 aa25.2■■□□□ 1.62
VPS53-211ENST00000571805 MBOAT7Q96N66 472 aa25.2■■□□□ 1.62
VPS53-211ENST00000571805 GLT8D2Q9H1C3 349 aa25.2■■□□□ 1.62
VPS53-211ENST00000571805 TBC1D7Q9P0N9 293 aa25.2■■□□□ 1.62
VPS53-211ENST00000571805 AARSP49588 968 aaKnown RBP eCLIP25.19■■□□□ 1.62
VPS53-211ENST00000571805 CCNI2Q6ZMN8 369 aaPredicted RBP25.19■■□□□ 1.62
VPS53-211ENST00000571805 MMGT1Q8N4V1 131 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 COG1Q8WTW3 980 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 MKL1Q969V6 931 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 CCDC102AQ96A19 550 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 ACBD3Q9H3P7 528 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 MED4Q9NPJ6 270 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 NPHP3-ACAD11A0A0J9YXS1 232 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 POTEB3A0JP26 581 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 POTECB2RU33 542 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 SIPA1L1O43166 1804 aa25.19■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms