RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 ZNF577Q9BSK1 485 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 GSG1L2A8MUP6 293 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 SRGAP2O75044 1071 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 ATF7P17544 494 aaPredicted RBP16.73■□□□□ 0.27
CIITA-204ENST00000570546 MAP2K2P36507 400 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 NIM1KQ8IY84 436 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 SPICE1Q8N0Z3 855 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 HOOK2Q96ED9 719 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 PNMA6FA0A0J9YX94 578 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 NMT2O60551 498 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 HNRNPH2P55795 449 aaKnown RBP16.73■□□□□ 0.27
CIITA-204ENST00000570546 ANKRD20A3Q5VUR7 823 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 SH3RF3Q8TEJ3 882 aaPredicted RBP16.73■□□□□ 0.27
CIITA-204ENST00000570546 ADGRG1Q9Y653 693 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 H0YCG3 227 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 KCNQ4P56696 695 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 CCZ1BP86790 482 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 CCZ1P86791 482 aaPredicted RBP16.73■□□□□ 0.27
CIITA-204ENST00000570546 GNPTABQ3T906 1256 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 UNC13DQ70J99 1090 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 METTL16Q86W50 562 aaKnown RBP16.73■□□□□ 0.27
CIITA-204ENST00000570546 CCPG1Q9ULG6 757 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 ATP8A1Q9Y2Q0 1164 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 RIPOR2Q9Y4F9 1068 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 NSFP46459 744 aaKnown RBP16.72■□□□□ 0.27
CIITA-204ENST00000570546 WHAMMQ8TF30 809 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 VTI1AQ96AJ9 217 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 MORC2Q9Y6X9 1032 aaPredicted RBP16.72■□□□□ 0.27
CIITA-204ENST00000570546 STAM2O75886 525 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 RNF10Q8N5U6 811 aaKnown RBP16.72■□□□□ 0.27
CIITA-204ENST00000570546 KANSL2Q9H9L4 492 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 INTS9Q9NV88 658 aaKnown RBP16.72■□□□□ 0.27
CIITA-204ENST00000570546 PTPRUQ92729 1446 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 NBPF26B4DH59 902 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 AOC3Q16853 763 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 NBPF10Q6P3W6 841 aaKnown RBP16.72■□□□□ 0.27
CIITA-204ENST00000570546 NBPF15Q8N660 670 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 DPF2Q92785 391 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 MRFAP1Q9Y605 127 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 CPDO75976 1380 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 SORBS3O60504 671 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 CHGBP05060 677 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 CAPN12Q6ZSI9 719 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 LRRN2O75325 713 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 NT5C1BQ96P26 610 aa16.72■□□□□ 0.27
CIITA-204ENST00000570546 NRXN1Q9ULB1 1477 aa16.71■□□□□ 0.27
CIITA-204ENST00000570546 PLTPP55058 493 aa16.71■□□□□ 0.27
CIITA-204ENST00000570546 DHX9Q08211 1270 aaKnown RBP16.71■□□□□ 0.27
CIITA-204ENST00000570546 CASC4Q6P4E1 433 aa16.71■□□□□ 0.27
CIITA-204ENST00000570546 CCDC197Q8NCU1 140 aa16.71■□□□□ 0.27
CIITA-204ENST00000570546 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.71■□□□□ 0.27
CIITA-204ENST00000570546 POMGNT1Q8WZA1 660 aa16.71■□□□□ 0.27
CIITA-204ENST00000570546 HADHQ16836 314 aaKnown RBP16.71■□□□□ 0.27
CIITA-204ENST00000570546 ACCSQ96QU6 501 aa16.71■□□□□ 0.27
CIITA-204ENST00000570546 PPP1R12CQ9BZL4 782 aa16.71■□□□□ 0.27
CIITA-204ENST00000570546 PIK3CAP42336 1068 aa16.71■□□□□ 0.27
CIITA-204ENST00000570546 PPP4R3CPQ6ZMV5 832 aa16.71■□□□□ 0.27
CIITA-204ENST00000570546 CTAGE3PQ8IX95 158 aa16.71■□□□□ 0.27
CIITA-204ENST00000570546 FBXO2Q9UK22 296 aaPredicted RBP16.71■□□□□ 0.27
CIITA-204ENST00000570546 ADAM21Q9UKJ8 722 aa16.71■□□□□ 0.27
CIITA-204ENST00000570546 P4HA1P13674 534 aa16.71■□□□□ 0.26
CIITA-204ENST00000570546 GUCY1A2P33402 732 aa16.71■□□□□ 0.26
CIITA-204ENST00000570546 SNCBQ16143 134 aa16.71■□□□□ 0.26
CIITA-204ENST00000570546 EMBQ6PCB8 327 aa16.71■□□□□ 0.26
CIITA-204ENST00000570546 ZNF653Q96CK0 615 aa16.71■□□□□ 0.26
CIITA-204ENST00000570546 BBOX1O75936 387 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 GDF11O95390 407 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 GRAPQ13588 217 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 GRAPLQ8TC17 118 aaPredicted RBP16.7■□□□□ 0.26
CIITA-204ENST00000570546 RNF34Q969K3 372 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 NACC1Q96RE7 527 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 EPC1Q9H2F5 836 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 SERPINB2P05120 415 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 MAN1A1P33908 653 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 PTK2Q05397 1052 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 KAZNQ674X7 775 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 TACO1Q9BSH4 297 aaKnown RBP16.7■□□□□ 0.26
CIITA-204ENST00000570546 AP1M1Q9BXS5 423 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 WDR11Q9BZH6 1224 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 SRP68Q9UHB9 627 aaKnown RBP16.7■□□□□ 0.26
CIITA-204ENST00000570546 A0A087WUV0 522 aaPredicted RBP16.7■□□□□ 0.26
CIITA-204ENST00000570546 IFNAR2P48551 515 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 PAXIP1Q6ZW49 1069 aaPredicted RBP16.7■□□□□ 0.26
CIITA-204ENST00000570546 SLC17A8Q8NDX2 589 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 NFU1Q9UMS0 254 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 ANO9A1A5B4 782 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 NR1D1P20393 614 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 SLC8A1P32418 973 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 CLEC4GQ6UXB4 293 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 RAB3IL1Q8TBN0 382 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 TMEM47Q9BQJ4 181 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 PCIF1Q9H4Z3 704 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 ST7Q9NRC1 585 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 MINPP1Q9UNW1 487 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 ZNF148Q9UQR1 794 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 GINS2Q9Y248 185 aa16.7■□□□□ 0.26
CIITA-204ENST00000570546 PIK3C2BO00750 1634 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 PRDX5P30044 214 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 MRPS25P82663 173 aaKnown RBP16.69■□□□□ 0.26
CIITA-204ENST00000570546 BFSP1Q12934 665 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms