RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 THOC7Q6I9Y2 204 aaKnown RBP11.89□□□□□ -0.51
CLK3-226ENST00000569406 SAMD3Q8N6K7 520 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 FSIP1Q8NA03 581 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 PRCCQ92733 491 aaPredicted RBP11.89□□□□□ -0.51
CLK3-226ENST00000569406 RRP36Q96EU6 259 aaKnown RBP11.89□□□□□ -0.51
CLK3-226ENST00000569406 CAPZA3Q96KX2 299 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 SPATA17Q96L03 361 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 USP28Q96RU2 1077 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 EPB41L4AQ9HCS5 686 aaPredicted RBP11.89□□□□□ -0.51
CLK3-226ENST00000569406 HSF2BPO75031 334 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 OXCT1P55809 520 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 MRPS35P82673 323 aaKnown RBP11.88□□□□□ -0.51
CLK3-226ENST00000569406 WASHC4Q2M389 1173 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 CACNA2D3Q8IZS8 1091 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 ZMAT2Q96NC0 199 aaKnown RBP11.88□□□□□ -0.51
CLK3-226ENST00000569406 PAGR1Q9BTK6 254 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 FAM184BQ9ULE4 1060 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 TMCO1Q9UM00 188 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 ZNF711Q9Y462 761 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 GPR75-ASB3A0A0A6YYF3 556 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 UNCXA6NJT0 531 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 FLOT1O75955 427 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 ZFYP08048 801 aaPredicted RBP11.88□□□□□ -0.51
CLK3-226ENST00000569406 CRKLP46109 303 aaKnown RBP11.88□□□□□ -0.51
CLK3-226ENST00000569406 NSUN2Q08J23 767 aaKnown RBP eCLIP11.88□□□□□ -0.51
CLK3-226ENST00000569406 METTL24Q5JXM2 366 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 CLMNQ96JQ2 1002 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 NAPGQ99747 312 aaPredicted RBP11.88□□□□□ -0.51
CLK3-226ENST00000569406 TRMT112Q9UI30 125 aaKnown RBP11.88□□□□□ -0.51
CLK3-226ENST00000569406 CFAP45Q9UL16 551 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 ASB3Q9Y575 518 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 NTSR2O95665 410 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 KRT14P02533 472 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 HARSP12081 509 aaKnown RBP11.88□□□□□ -0.51
CLK3-226ENST00000569406 PDE6CP51160 858 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 KLC1Q07866 573 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 SLC44A4Q53GD3 710 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 ANO7Q6IWH7 933 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 C3orf67Q6ZVT6 689 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 SLC43A3Q8NBI5 491 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 ABHD8Q96I13 439 aa11.88□□□□□ -0.51
CLK3-226ENST00000569406 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.88□□□□□ -0.51
CLK3-226ENST00000569406 FAM217BQ9NTX9 383 aaPredicted RBP11.88□□□□□ -0.51
CLK3-226ENST00000569406 TESPA1A2RU30 521 aaPredicted RBP11.87□□□□□ -0.51
CLK3-226ENST00000569406 CBFA2T2O43439 604 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 TIMM44O43615 452 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 RASGRF1Q13972 1273 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 RASIP1Q5U651 963 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 DDX12PQ92771 950 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 SLC7A5P2Q9GIP4 190 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 KIF28PB7ZC32 967 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 UBE2Q2LH0YL09 131 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 SCG2P13521 617 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 ATP2A2P16615 1042 aaKnown RBP11.87□□□□□ -0.51
CLK3-226ENST00000569406 OTUD7BQ6GQQ9 843 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 TMEM53Q6P2H8 277 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 SRPK1Q96SB4 655 aaKnown RBP11.87□□□□□ -0.51
CLK3-226ENST00000569406 MPHOSPH6Q99547 160 aaKnown RBP11.87□□□□□ -0.51
CLK3-226ENST00000569406 BPIFA3Q9BQP9 254 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 VCX3BQ9H321 246 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 VCX3AQ9NNX9 186 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 KCNQ2O43526 872 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 RAD21O60216 631 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 STX10O60499 249 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 GSTT1P30711 240 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 TUFMP49411 452 aaKnown RBP11.87□□□□□ -0.51
CLK3-226ENST00000569406 CAGE1Q8TC20 777 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 STRBPQ96SI9 672 aaKnown RBP11.87□□□□□ -0.51
CLK3-226ENST00000569406 VCXQ9H320 206 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 DMAP1Q9NPF5 467 aaPredicted RBP11.87□□□□□ -0.51
CLK3-226ENST00000569406 PRELID1Q9Y255 219 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 STK38LQ9Y2H1 464 aa11.87□□□□□ -0.51
CLK3-226ENST00000569406 COL24A1Q17RW2 1714 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 SPATA31A5Q5VU36 1347 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 SPATA31A7Q8IWB4 1347 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 TMEM247A6NEH6 219 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 SOWAHDA6NJG2 315 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 CETN3O15182 167 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 PDE6AP16499 860 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 NR1D1P20393 614 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 PLOD1Q02809 727 aaPredicted RBP11.86□□□□□ -0.51
CLK3-226ENST00000569406 UBE3CQ15386 1083 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 TMEM139Q8IV31 216 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 MKS1Q9NXB0 559 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 SH3GLB1Q9Y371 365 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 ZNF532Q9HCE3 1301 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 RTL9Q8NET4 1388 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 SMIM22K7EJ46 135 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 DNAJC8O75937 253 aaPredicted RBP11.86□□□□□ -0.51
CLK3-226ENST00000569406 ITGA7Q13683 1181 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 TUBB2AQ13885 445 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 SLC9C2Q5TAH2 1124 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 OLFML2BQ68BL8 750 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 LMBRD2Q68DH5 695 aaPredicted RBP11.86□□□□□ -0.51
CLK3-226ENST00000569406 CAPN12Q6ZSI9 719 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 ERMNQ8TAM6 284 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 IGDCC4Q8TDY8 1250 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 SEC16BQ96JE7 1060 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 TUBB2BQ9BVA1 445 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 LEMD3Q9Y2U8 911 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms