RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 CIITAP33076 1130 aa22.58■■□□□ 1.2
CLN3-230ENST00000568076 ERCC6LQ2NKX8 1250 aa22.58■■□□□ 1.2
CLN3-230ENST00000568076 WDR59Q6PJI9 974 aa22.58■■□□□ 1.2
CLN3-230ENST00000568076 MIGA2Q7L4E1 593 aa22.58■■□□□ 1.2
CLN3-230ENST00000568076 CCDC94Q9BW85 323 aaPredicted RBP22.58■■□□□ 1.2
CLN3-230ENST00000568076 FGFBP2Q9BYJ0 223 aa22.58■■□□□ 1.2
CLN3-230ENST00000568076 SMCHD1A6NHR9 2005 aa22.57■■□□□ 1.2
CLN3-230ENST00000568076 PIK3CDO00329 1044 aa22.57■■□□□ 1.2
CLN3-230ENST00000568076 ABL1P00519 1130 aa22.57■■□□□ 1.2
CLN3-230ENST00000568076 MAP3K9P80192 1104 aa22.57■■□□□ 1.2
CLN3-230ENST00000568076 LRRC55Q6ZSA7 311 aa22.57■■□□□ 1.2
CLN3-230ENST00000568076 MTMR14Q8NCE2 650 aa22.57■■□□□ 1.2
CLN3-230ENST00000568076 CYP2W1Q8TAV3 490 aa22.57■■□□□ 1.2
CLN3-230ENST00000568076 AGPAT5Q9NUQ2 364 aa22.57■■□□□ 1.2
CLN3-230ENST00000568076 PANK4Q9NVE7 773 aa22.57■■□□□ 1.2
CLN3-230ENST00000568076 CGNQ9P2M7 1197 aaKnown RBP22.57■■□□□ 1.2
CLN3-230ENST00000568076 NPHP3-ACAD11A0A0J9YXS1 232 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 POTEFA5A3E0 1075 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 SLC26A4O43511 780 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 POTEIP0CG38 1075 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 CYP11B2P19099 503 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 LRRC63Q05C16 580 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 FKBP1CQ5VVH2 108 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 POTEGQ6S5H5 508 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 POTEEQ6S8J3 1075 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 CATSPER3Q86XQ3 398 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 AGBL3Q8NEM8 1001 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 GOPCQ9HD26 462 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 PGAP2Q9UHJ9 254 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 PCDHA2Q9Y5H9 948 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 TBC1D12O60347 775 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 HOXA7P31268 230 aaPredicted RBP22.56■■□□□ 1.2
CLN3-230ENST00000568076 GPBP1Q86WP2 473 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 NIM1KQ8IY84 436 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 TBC1D5Q92609 795 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 ZBED3Q96IU2 234 aaPredicted RBP22.56■■□□□ 1.2
CLN3-230ENST00000568076 ERGIC2Q96RQ1 377 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 SLF1Q9BQI6 1058 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 CARD6Q9BX69 1037 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 VPS33BQ9H267 617 aa22.56■■□□□ 1.2
CLN3-230ENST00000568076 REXO2Q9Y3B8 237 aaKnown RBP22.56■■□□□ 1.2
CLN3-230ENST00000568076 MSH4O15457 936 aa22.55■■□□□ 1.2
CLN3-230ENST00000568076 SPATA31C1P0DKV0 1188 aa22.55■■□□□ 1.2
CLN3-230ENST00000568076 ARHGAP25P42331 645 aa22.55■■□□□ 1.2
CLN3-230ENST00000568076 SLC12A3P55017 1021 aa22.55■■□□□ 1.2
CLN3-230ENST00000568076 CACNB1Q02641 598 aaPredicted RBP22.55■■□□□ 1.2
CLN3-230ENST00000568076 CXCL9Q07325 125 aa22.55■■□□□ 1.2
CLN3-230ENST00000568076 ZCWPW2Q504Y3 356 aa22.55■■□□□ 1.2
CLN3-230ENST00000568076 ARSHQ5FYA8 562 aa22.55■■□□□ 1.2
CLN3-230ENST00000568076 FAM26FQ5R3K3 315 aa22.55■■□□□ 1.2
CLN3-230ENST00000568076 NCAPH2Q6IBW4 605 aa22.55■■□□□ 1.2
CLN3-230ENST00000568076 MRFAP1Q9Y605 127 aa22.55■■□□□ 1.2
CLN3-230ENST00000568076 KIF13BQ9NQT8 1826 aa22.55■■□□□ 1.2
CLN3-230ENST00000568076 CYP3A4P08684 503 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 TRIM21P19474 475 aaKnown RBP22.54■■□□□ 1.2
CLN3-230ENST00000568076 BAG6P46379 1132 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 PSMC6P62333 389 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 ZYXQ15942 572 aaKnown RBP22.54■■□□□ 1.2
CLN3-230ENST00000568076 HAUS3Q68CZ6 603 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 FAM83AQ86UY5 434 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 MYOCDQ8IZQ8 938 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 GLIS2Q9BZE0 524 aaPredicted RBP22.54■■□□□ 1.2
CLN3-230ENST00000568076 VCPKMTQ9H867 229 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 BMP2KQ9NSY1 1161 aaPredicted RBP22.54■■□□□ 1.2
CLN3-230ENST00000568076 TBC1D7Q9P0N9 293 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 NDUFA10O95299 355 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 MEA1Q16626 185 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 NBPF9Q3BBW0 867 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 VWA3BQ502W6 1294 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 FOXR2Q6PJQ5 311 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 RETREG2Q8NC44 543 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 FAM20AQ96MK3 541 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 NUP58Q9BVL2 599 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 RANBP17Q9H2T7 1088 aaKnown RBP22.54■■□□□ 1.2
CLN3-230ENST00000568076 VAV3Q9UKW4 847 aa22.54■■□□□ 1.2
CLN3-230ENST00000568076 EPN1Q9Y6I3 576 aaPredicted RBP22.54■■□□□ 1.2
CLN3-230ENST00000568076 ABCB11O95342 1321 aa22.53■■□□□ 1.2
CLN3-230ENST00000568076 SHTN1A0MZ66 631 aa22.53■■□□□ 1.2
CLN3-230ENST00000568076 TADA3O75528 432 aa22.53■■□□□ 1.2
CLN3-230ENST00000568076 CAP2P40123 477 aa22.53■■□□□ 1.2
CLN3-230ENST00000568076 RAD51AP2Q09MP3 1159 aa22.53■■□□□ 1.2
CLN3-230ENST00000568076 CCDC174Q6PII3 467 aa22.53■■□□□ 1.2
CLN3-230ENST00000568076 FBXO38Q6PIJ6 1188 aa22.53■■□□□ 1.2
CLN3-230ENST00000568076 NDST4Q9H3R1 872 aa22.53■■□□□ 1.2
CLN3-230ENST00000568076 IGLV3-22A0A075B6J6 115 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 FRMD3A2A2Y4 597 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 WNT10BO00744 389 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 KIF5CO60282 957 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 RPA1P27694 616 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 FIGNQ5HY92 759 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 FKBP15Q5T1M5 1219 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 CCDC84Q86UT8 332 aaPredicted RBP22.52■■□□□ 1.2
CLN3-230ENST00000568076 CCDC65Q8IXS2 484 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 ZNF397Q8NF99 534 aaPredicted RBP22.52■■□□□ 1.2
CLN3-230ENST00000568076 SLC16A10Q8TF71 515 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 MEIS1O00470 390 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 FGFR1OPO95684 399 aaKnown RBP22.52■■□□□ 1.2
CLN3-230ENST00000568076 CFBP00751 764 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 MAN2A1Q16706 1144 aa22.52■■□□□ 1.2
CLN3-230ENST00000568076 KIF4BQ2VIQ3 1234 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms