RNA–Protein interactions for RNA: ENST00000567674.1

CDH3-206, Transcript of cadherin 3, humanhuman

TSL 3

Gene CDH3, Length 892 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-206ENST00000567674 SPATA31C2B4DYI2 1134 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 HAS3O00219 553 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 MEIS2O14770 477 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 RGS20O76081 388 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 ARIH2O95376 493 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 F2P00734 622 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 MYL3P08590 195 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 EVCP57679 992 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 IRX5P78411 483 aaPredicted RBP12.88□□□□□ -0.35
CDH3-206ENST00000567674 NBPF20Q3BBV1 942 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 TMEM240Q5SV17 173 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 METTL7BQ6UX53 244 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 NLRX1Q86UT6 975 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 SMARCC2Q8TAQ2 1214 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 AFG1LQ8WV93 481 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 GPRASP2Q96D09 838 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 KIAA1217Q5T5P2 1943 aa12.88□□□□□ -0.35
CDH3-206ENST00000567674 NID2Q14112 1375 aa12.87□□□□□ -0.35
CDH3-206ENST00000567674 FGBP02675 491 aa12.87□□□□□ -0.35
CDH3-206ENST00000567674 RPLP2P05387 115 aaKnown RBP12.87□□□□□ -0.35
CDH3-206ENST00000567674 TMEM63BQ5T3F8 832 aa12.87□□□□□ -0.35
CDH3-206ENST00000567674 RETREG2Q8NC44 543 aa12.87□□□□□ -0.35
CDH3-206ENST00000567674 PHOSPHO2Q8TCD6 241 aa12.87□□□□□ -0.35
CDH3-206ENST00000567674 AFAP1L1Q8TED9 768 aa12.87□□□□□ -0.35
CDH3-206ENST00000567674 TNPO1Q92973 898 aaKnown RBP12.87□□□□□ -0.35
CDH3-206ENST00000567674 TM6SF1Q9BZW5 370 aa12.87□□□□□ -0.35
CDH3-206ENST00000567674 TTYH1Q9H313 450 aaPredicted RBP12.87□□□□□ -0.35
CDH3-206ENST00000567674 PPP4R2Q9NY27 417 aa12.87□□□□□ -0.35
CDH3-206ENST00000567674 EFCAB14O75071 495 aa12.86□□□□□ -0.35
CDH3-206ENST00000567674 CAND2O75155 1236 aa12.86□□□□□ -0.35
CDH3-206ENST00000567674 MYCLP12524 364 aaPredicted RBP12.86□□□□□ -0.35
CDH3-206ENST00000567674 ACTN1P12814 892 aa12.86□□□□□ -0.35
CDH3-206ENST00000567674 CSF2RAP15509 400 aa12.86□□□□□ -0.35
CDH3-206ENST00000567674 HOXA13P31271 388 aaPredicted RBP12.86□□□□□ -0.35
CDH3-206ENST00000567674 AP3B2Q13367 1082 aa12.86□□□□□ -0.35
CDH3-206ENST00000567674 RTN1Q16799 776 aa12.86□□□□□ -0.35
CDH3-206ENST00000567674 C9orf50Q5SZB4 431 aa12.86□□□□□ -0.35
CDH3-206ENST00000567674 RASEFQ8IZ41 740 aa12.86□□□□□ -0.35
CDH3-206ENST00000567674 CCDC12Q8WUD4 166 aaPredicted RBP12.86□□□□□ -0.35
CDH3-206ENST00000567674 KAT2BQ92831 832 aa12.86□□□□□ -0.35
CDH3-206ENST00000567674 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.86□□□□□ -0.35
CDH3-206ENST00000567674 TRPV6Q9H1D0 765 aa12.86□□□□□ -0.35
CDH3-206ENST00000567674 MLXIPQ9HAP2 919 aa12.86□□□□□ -0.35
CDH3-206ENST00000567674 GTF2IRD1Q9UHL9 959 aa12.86□□□□□ -0.35
CDH3-206ENST00000567674 TTC28Q96AY4 2481 aa12.86□□□□□ -0.35
CDH3-206ENST00000567674 SPDYE3A6NKU9 549 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 BAIAP3O94812 1187 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 GNAT1P11488 350 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 PSMC6P62333 389 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 MRPS9P82933 396 aaKnown RBP12.85□□□□□ -0.35
CDH3-206ENST00000567674 FGD1P98174 961 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 FUT2Q10981 343 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 PTK7Q13308 1070 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 RAB30Q15771 203 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 BLOC1S2Q6QNY1 142 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 C16orf59Q7L2K0 433 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 FCHSD1Q86WN1 690 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 C7orf31Q8N865 590 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 ATXN2LQ8WWM7 1075 aaKnown RBP12.85□□□□□ -0.35
CDH3-206ENST00000567674 COPS5Q92905 334 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 SPATA33Q96N06 139 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 RIC8AQ9NPQ8 531 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 BARHL2Q9NY43 387 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 NOD1Q9Y239 953 aa12.85□□□□□ -0.35
CDH3-206ENST00000567674 DDX49Q9Y6V7 483 aaKnown RBP12.85□□□□□ -0.35
CDH3-206ENST00000567674 ESYT2A0FGR8 921 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 PLEKHA8P1O95397 391 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 GGPS1O95749 300 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 IQCF3P0C7M6 154 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 UBA1P22314 1058 aaKnown RBP12.84□□□□□ -0.35
CDH3-206ENST00000567674 HOXC8P31273 242 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 CYP2C18P33260 490 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 EPHB4P54760 987 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 PTGISQ16647 500 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 ADCK5Q3MIX3 580 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 ZNF365Q70YC5 407 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 NIPA1Q7RTP0 329 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 MICU3Q86XE3 530 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 MYL10Q9BUA6 226 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 C1QTNF1Q9BXJ1 281 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 SNX14Q9Y5W7 946 aa12.84□□□□□ -0.35
CDH3-206ENST00000567674 H3BRB1 525 aa12.83□□□□□ -0.36
CDH3-206ENST00000567674 NOP56O00567 594 aaKnown RBP12.83□□□□□ -0.36
CDH3-206ENST00000567674 RPS6KB1P23443 525 aa12.83□□□□□ -0.36
CDH3-206ENST00000567674 GNA11P29992 359 aa12.83□□□□□ -0.36
CDH3-206ENST00000567674 PSEN2P49810 448 aa12.83□□□□□ -0.36
CDH3-206ENST00000567674 METAP2P50579 478 aaKnown RBP eCLIP12.83□□□□□ -0.36
CDH3-206ENST00000567674 SP2Q02086 613 aa12.83□□□□□ -0.36
CDH3-206ENST00000567674 MFSD10Q14728 455 aa12.83□□□□□ -0.36
CDH3-206ENST00000567674 PFKFB3Q16875 520 aaPredicted RBP12.83□□□□□ -0.36
CDH3-206ENST00000567674 HSDL1Q3SXM5 330 aa12.83□□□□□ -0.36
CDH3-206ENST00000567674 RPAINQ86UA6 219 aa12.83□□□□□ -0.36
CDH3-206ENST00000567674 C16orf70Q9BSU1 422 aa12.83□□□□□ -0.36
CDH3-206ENST00000567674 PPP1R12CQ9BZL4 782 aa12.83□□□□□ -0.36
CDH3-206ENST00000567674 WNT8AQ9H1J5 351 aa12.83□□□□□ -0.36
CDH3-206ENST00000567674 TUT1Q9H6E5 874 aaKnown RBP12.83□□□□□ -0.36
CDH3-206ENST00000567674 ZSWIM6Q9HCJ5 1215 aa12.83□□□□□ -0.36
CDH3-206ENST00000567674 TRMT13Q9NUP7 481 aaKnown RBP12.83□□□□□ -0.36
CDH3-206ENST00000567674 ZNF215Q9UL58 517 aaPredicted RBP12.83□□□□□ -0.36
CDH3-206ENST00000567674 BRPF3Q9ULD4 1205 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms