RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 PPP2R5BQ15173 497 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 SLFN13Q68D06 897 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 FAM117BQ6P1L5 589 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 BLOC1S2Q6QNY1 142 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 CYB5R4Q7L1T6 521 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 CHST3Q7LGC8 479 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 MB21D2Q8IYB1 491 aaPredicted RBP13.16□□□□□ -0.3
CLN3-226ENST00000567160 EDAQ92838 391 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 PBXIP1Q96AQ6 731 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 TCEANC2Q96MN5 208 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 MPHOSPH6Q99547 160 aaKnown RBP13.16□□□□□ -0.3
CLN3-226ENST00000567160 ZKSCAN3Q9BRR0 538 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 C17orf80Q9BSJ5 609 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 NSUN3Q9H649 340 aaKnown RBP13.16□□□□□ -0.3
CLN3-226ENST00000567160 ZSWIM5Q9P217 1185 aa13.16□□□□□ -0.3
CLN3-226ENST00000567160 DDX49Q9Y6V7 483 aaKnown RBP13.16□□□□□ -0.3
CLN3-226ENST00000567160 LCTP09848 1927 aa13.15□□□□□ -0.3
CLN3-226ENST00000567160 PTPRZ1P23471 2315 aaPredicted RBP13.15□□□□□ -0.3
CLN3-226ENST00000567160 A6NJR5 290 aa13.15□□□□□ -0.3
CLN3-226ENST00000567160 PSMA5P28066 241 aa13.15□□□□□ -0.3
CLN3-226ENST00000567160 CHMP4BP1P59074 171 aa13.15□□□□□ -0.3
CLN3-226ENST00000567160 COL19A1Q14993 1142 aa13.15□□□□□ -0.3
CLN3-226ENST00000567160 SMAD2Q15796 467 aaKnown RBP13.15□□□□□ -0.3
CLN3-226ENST00000567160 TCEAL5Q5H9L2 206 aa13.15□□□□□ -0.3
CLN3-226ENST00000567160 NSMFQ6X4W1 530 aa13.15□□□□□ -0.3
CLN3-226ENST00000567160 LRRC47Q8N1G4 583 aaKnown RBP13.15□□□□□ -0.3
CLN3-226ENST00000567160 KIF2CQ99661 725 aa13.15□□□□□ -0.3
CLN3-226ENST00000567160 LRRC2Q9BYS8 371 aa13.15□□□□□ -0.3
CLN3-226ENST00000567160 CLDND1Q9NY35 253 aa13.15□□□□□ -0.3
CLN3-226ENST00000567160 MTMR4Q9NYA4 1195 aa13.15□□□□□ -0.3
CLN3-226ENST00000567160 MICAL3Q7RTP6 2002 aa13.15□□□□□ -0.3
CLN3-226ENST00000567160 ZFHX2Q9C0A1 2572 aaPredicted RBP13.14□□□□□ -0.31
CLN3-226ENST00000567160 IGKV6D-41A0A0C4DH26 115 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 RBM47A0AV96 593 aaKnown RBP13.14□□□□□ -0.31
CLN3-226ENST00000567160 TMEM221A6NGB7 291 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 M0R296 226 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 PRC1O43663 620 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 NMT2O60551 498 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 AMHP03971 560 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 MCM5P33992 734 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 ALDH5A1P51649 535 aaPredicted RBP13.14□□□□□ -0.31
CLN3-226ENST00000567160 ANTXR2P58335 489 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 RBL2Q08999 1139 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 TCF15Q12870 199 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 EPC2Q52LR7 807 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 IER5LQ5T953 404 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 RNF135Q8IUD6 432 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 NEDD1Q8NHV4 660 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 CEP95Q96GE4 821 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 TM6SF1Q9BZW5 370 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 CYP46A1Q9Y6A2 500 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 CACNA1HO95180 2353 aa13.14□□□□□ -0.31
CLN3-226ENST00000567160 PLIN4Q96Q06 1357 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 H3BNC9 293 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 HMGB1P09429 215 aaKnown RBP13.13□□□□□ -0.31
CLN3-226ENST00000567160 RPS6KB1P23443 525 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 SLC1A4P43007 532 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 GPM6BQ13491 265 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 GPNMBQ14956 572 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 MUM1L1Q5H9M0 696 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 TRIM67Q6ZTA4 783 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 RUFY3Q7L099 469 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 DHX32Q7L7V1 743 aaKnown RBP13.13□□□□□ -0.31
CLN3-226ENST00000567160 SESTD1Q86VW0 696 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 IQCA1Q86XH1 822 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 SCFD2Q8WU76 684 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 PPP1R13LQ8WUF5 828 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 IL17RAQ96F46 866 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 GMCL1Q96IK5 515 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 UBAC1Q9BSL1 405 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 ZSWIM6Q9HCJ5 1215 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 CCPG1Q9ULG6 757 aa13.13□□□□□ -0.31
CLN3-226ENST00000567160 NLRC5Q86WI3 1866 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 KMT2EQ8IZD2 1858 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 C5orf42Q9H799 3197 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 IFIT3O14879 490 aaKnown RBP13.12□□□□□ -0.31
CLN3-226ENST00000567160 PLA2G6O60733 806 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 NBNO60934 754 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 CKBP12277 381 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 HTRA4P83105 476 aaPredicted RBP13.12□□□□□ -0.31
CLN3-226ENST00000567160 PDE4DQ08499 809 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 PPP4R3BQ5MIZ7 849 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 GDF6Q6KF10 455 aaPredicted RBP13.12□□□□□ -0.31
CLN3-226ENST00000567160 ERMP1Q7Z2K6 904 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 RPAINQ86UA6 219 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 FBXL6Q8N531 539 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 SP7Q8TDD2 431 aaPredicted RBP13.12□□□□□ -0.31
CLN3-226ENST00000567160 ZSCAN10Q96SZ4 725 aaPredicted RBP13.12□□□□□ -0.31
CLN3-226ENST00000567160 IL17RBQ9NRM6 502 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 PDRG1Q9NUG6 133 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 RALGAPA2Q2PPJ7 1873 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 EMSYQ7Z589 1322 aa13.12□□□□□ -0.31
CLN3-226ENST00000567160 MYH6P13533 1939 aa13.11□□□□□ -0.31
CLN3-226ENST00000567160 MYO7AQ13402 2215 aa13.11□□□□□ -0.31
CLN3-226ENST00000567160 ERICH2A1L162 156 aa13.11□□□□□ -0.31
CLN3-226ENST00000567160 B4DLN1 442 aa13.11□□□□□ -0.31
CLN3-226ENST00000567160 STXBP3O00186 592 aa13.11□□□□□ -0.31
CLN3-226ENST00000567160 NEK4P51957 841 aa13.11□□□□□ -0.31
CLN3-226ENST00000567160 MRPL12P52815 198 aaKnown RBP13.11□□□□□ -0.31
CLN3-226ENST00000567160 FGD1P98174 961 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms