RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ASTN2O75129 1339 aaPredicted RBP14.72□□□□□ -0.05
VPS4A-204ENST00000566354 ANO9A1A5B4 782 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 BICDL2A1A5D9 508 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 TRIM21P19474 475 aaKnown RBP14.71□□□□□ -0.05
VPS4A-204ENST00000566354 SHMT1P34896 483 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 ZBED6P86452 979 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 GPR162Q16538 588 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 C9orf131Q5VYM1 1079 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 FAM114A1Q8IWE2 563 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 CDAN1Q8IWY9 1227 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 CSGALNACT2Q8N6G5 542 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 DAGLBQ8NCG7 672 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 ANKS1AQ92625 1134 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 GPKOWQ92917 476 aaPredicted RBP eCLIP14.71□□□□□ -0.05
VPS4A-204ENST00000566354 CCDC47Q96A33 483 aaKnown RBP14.71□□□□□ -0.05
VPS4A-204ENST00000566354 PI4KBQ9UBF8 816 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 CNTNAP1P78357 1384 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 PP2D1A8MPX8 630 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 B4DLN1 442 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 PPP1R2P41236 205 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 TBC1D8BQ0IIM8 1120 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 GPC2Q8N158 579 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 PNMA1Q8ND90 353 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 EHD4Q9H223 541 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 TMEM60Q9H2L4 133 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 NHEJ1Q9H9Q4 299 aaPredicted RBP14.71□□□□□ -0.05
VPS4A-204ENST00000566354 AGPAT5Q9NUQ2 364 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 PCDHA6Q9UN73 950 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 PCDHA8Q9Y5H6 950 aa14.71□□□□□ -0.05
VPS4A-204ENST00000566354 ATRNL1Q5VV63 1379 aa14.71□□□□□ -0.06
VPS4A-204ENST00000566354 MYO1CO00159 1063 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 PHACTR2O75167 634 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 DDNO94850 711 aaPredicted RBP14.7□□□□□ -0.06
VPS4A-204ENST00000566354 CCNE1P24864 410 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 CDK17Q00537 523 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 SRLQ86TD4 932 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 GOLGA6L1Q8N7Z2 621 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 RASGRP4Q8TDF6 673 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 CSRNP1Q96S65 589 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 DUSP9Q99956 384 aaKnown RBP14.7□□□□□ -0.06
VPS4A-204ENST00000566354 SRGAP2O75044 1071 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 AKR1B1P15121 316 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 GRM4Q14833 912 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 CCDC178Q5BJE1 867 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 FIGNQ5HY92 759 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 IQCEQ6IPM2 695 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 NEDD1Q8NHV4 660 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 COG1Q8WTW3 980 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 FAM151AQ8WW52 585 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 P2RX5Q93086 422 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 IQCDQ96DY2 449 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 AK8Q96MA6 479 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 TMEM39BQ9GZU3 492 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 FAM204AQ9H8W3 233 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 TCP11L1Q9NUJ3 509 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 SWAP70Q9UH65 585 aa14.7□□□□□ -0.06
VPS4A-204ENST00000566354 A0A1W2PQJ5 194 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 INF2Q27J81 1249 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 SHROOM1Q2M3G4 852 aaPredicted RBP14.69□□□□□ -0.06
VPS4A-204ENST00000566354 TYW1BQ6NUM6 668 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 STAG2Q8N3U4 1231 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 PURBQ96QR8 312 aaKnown RBP14.69□□□□□ -0.06
VPS4A-204ENST00000566354 TSGA10Q9BZW7 698 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 LACRTQ9GZZ8 138 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 RASSF4Q9H2L5 321 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 GPRC5DQ9NZD1 345 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 HPCAL4Q9UM19 191 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 STX8Q9UNK0 236 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 TFR2Q9UP52 801 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 RASSF10A6NK89 507 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 RNF40O75150 1001 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 SYF2O95926 243 aaKnown RBP14.69□□□□□ -0.06
VPS4A-204ENST00000566354 EPS15P42566 896 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 KIF5AQ12840 1032 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 CLEC10AQ8IUN9 316 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 CEP95Q96GE4 821 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 MYCBPQ99417 103 aaPredicted RBP14.69□□□□□ -0.06
VPS4A-204ENST00000566354 BARHL2Q9NY43 387 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 MAD2L2Q9UI95 211 aa14.69□□□□□ -0.06
VPS4A-204ENST00000566354 RRP15Q9Y3B9 282 aaKnown RBP14.69□□□□□ -0.06
VPS4A-204ENST00000566354 SOCS7O14512 581 aa14.68□□□□□ -0.06
VPS4A-204ENST00000566354 TNNT3P45378 269 aaPredicted RBP14.68□□□□□ -0.06
VPS4A-204ENST00000566354 FKBP1CQ5VVH2 108 aa14.68□□□□□ -0.06
VPS4A-204ENST00000566354 TRPM4Q8TD43 1214 aa14.68□□□□□ -0.06
VPS4A-204ENST00000566354 CAPZA3Q96KX2 299 aa14.68□□□□□ -0.06
VPS4A-204ENST00000566354 CNOT6LQ96LI5 555 aaKnown RBP14.68□□□□□ -0.06
VPS4A-204ENST00000566354 ERGIC2Q96RQ1 377 aa14.68□□□□□ -0.06
VPS4A-204ENST00000566354 PLIN2Q99541 437 aa14.68□□□□□ -0.06
VPS4A-204ENST00000566354 TRIM9Q9C026 710 aa14.68□□□□□ -0.06
VPS4A-204ENST00000566354 LCMT1Q9UIC8 334 aa14.68□□□□□ -0.06
VPS4A-204ENST00000566354 COL2A1P02458 1487 aaPredicted RBP14.68□□□□□ -0.06
VPS4A-204ENST00000566354 RCCD1A6NED2 376 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 IDEP14735 1019 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 MTIF2P46199 727 aaKnown RBP14.67□□□□□ -0.06
VPS4A-204ENST00000566354 VAV2P52735 878 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 SATB1Q01826 763 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 PDE4DQ08499 809 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 SPA17Q15506 151 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 ANKRD40Q6AI12 368 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 CCDC70Q6NSX1 233 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms