RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 HSDL1Q3SXM5 330 aa21.15■□□□□ 0.98
CLN3-214ENST00000565140 TYW1BQ6NUM6 668 aa21.15■□□□□ 0.98
CLN3-214ENST00000565140 DEFB123Q8N688 67 aa21.15■□□□□ 0.98
CLN3-214ENST00000565140 RNPC3Q96LT9 517 aaKnown RBP21.15■□□□□ 0.98
CLN3-214ENST00000565140 INPP4AQ96PE3 977 aaPredicted RBP21.15■□□□□ 0.98
CLN3-214ENST00000565140 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.15■□□□□ 0.983e-6■□□□□ 10.1
CLN3-214ENST00000565140 WNT8AQ9H1J5 351 aa21.15■□□□□ 0.98
CLN3-214ENST00000565140 STAM2O75886 525 aa21.14■□□□□ 0.97
CLN3-214ENST00000565140 ACRP10323 421 aa21.14■□□□□ 0.97
CLN3-214ENST00000565140 ICAM3P32942 547 aa21.14■□□□□ 0.97
CLN3-214ENST00000565140 RCAN1P53805 252 aa21.14■□□□□ 0.97
CLN3-214ENST00000565140 CCL23P55773 120 aa21.14■□□□□ 0.97
CLN3-214ENST00000565140 TMEM240Q5SV17 173 aa21.14■□□□□ 0.97
CLN3-214ENST00000565140 PCNX4Q63HM2 1172 aa21.14■□□□□ 0.97
CLN3-214ENST00000565140 FBXL16Q8N461 479 aa21.14■□□□□ 0.97
CLN3-214ENST00000565140 SPATA33Q96N06 139 aa21.14■□□□□ 0.97
CLN3-214ENST00000565140 SPATA31C2B4DYI2 1134 aa21.13■□□□□ 0.97
CLN3-214ENST00000565140 EPB41L2O43491 1005 aaKnown RBP21.13■□□□□ 0.97
CLN3-214ENST00000565140 SUPT20HL2P0C7V6 817 aa21.13■□□□□ 0.97
CLN3-214ENST00000565140 ZNF286BP0CG31 522 aa21.13■□□□□ 0.97
CLN3-214ENST00000565140 HOXD8P13378 290 aaPredicted RBP21.13■□□□□ 0.97
CLN3-214ENST00000565140 PTPN11Q06124 597 aaPredicted RBP21.13■□□□□ 0.97
CLN3-214ENST00000565140 GNPTABQ3T906 1256 aa21.13■□□□□ 0.97
CLN3-214ENST00000565140 AGXT2Q9BYV1 514 aa21.13■□□□□ 0.97
CLN3-214ENST00000565140 PPFIA4O75335 1185 aa21.12■□□□□ 0.97
CLN3-214ENST00000565140 PSMA5P28066 241 aa21.12■□□□□ 0.97
CLN3-214ENST00000565140 METAP2P50579 478 aaKnown RBP eCLIP21.12■□□□□ 0.97
CLN3-214ENST00000565140 XRRA1Q6P2D8 792 aa21.12■□□□□ 0.97
CLN3-214ENST00000565140 ZNF365Q70YC5 407 aa21.12■□□□□ 0.97
CLN3-214ENST00000565140 TET1Q8NFU7 2136 aa21.12■□□□□ 0.97
CLN3-214ENST00000565140 VWCEQ96DN2 955 aa21.12■□□□□ 0.97
CLN3-214ENST00000565140 CTAGE1Q96RT6 745 aa21.12■□□□□ 0.97
CLN3-214ENST00000565140 MLXIPQ9HAP2 919 aa21.12■□□□□ 0.97
CLN3-214ENST00000565140 IL23AQ9NPF7 189 aa21.12■□□□□ 0.97
CLN3-214ENST00000565140 STXBP3O00186 592 aa21.11■□□□□ 0.97
CLN3-214ENST00000565140 F2P00734 622 aa21.11■□□□□ 0.97
CLN3-214ENST00000565140 PSEN2P49810 448 aa21.11■□□□□ 0.97
CLN3-214ENST00000565140 NAPAP54920 295 aa21.11■□□□□ 0.97
CLN3-214ENST00000565140 GDF6Q6KF10 455 aaPredicted RBP21.11■□□□□ 0.97
CLN3-214ENST00000565140 SCLYQ96I15 445 aa21.11■□□□□ 0.97
CLN3-214ENST00000565140 ALG1Q9BT22 464 aa21.11■□□□□ 0.97
CLN3-214ENST00000565140 ZSWIM6Q9HCJ5 1215 aa21.11■□□□□ 0.97
CLN3-214ENST00000565140 HDAC6Q9UBN7 1215 aa21.11■□□□□ 0.97
CLN3-214ENST00000565140 PCDHA6Q9UN73 950 aa21.11■□□□□ 0.97
CLN3-214ENST00000565140 TELO2Q9Y4R8 837 aa21.11■□□□□ 0.97
CLN3-214ENST00000565140 PCDHA8Q9Y5H6 950 aa21.11■□□□□ 0.97
CLN3-214ENST00000565140 TANC1Q9C0D5 1861 aa21.11■□□□□ 0.97
CLN3-214ENST00000565140 GBF1Q92538 1859 aa21.1■□□□□ 0.97
CLN3-214ENST00000565140 HAS3O00219 553 aa21.1■□□□□ 0.97
CLN3-214ENST00000565140 FIBPO43427 364 aa21.1■□□□□ 0.97
CLN3-214ENST00000565140 SMAD3P84022 425 aaKnown RBP21.1■□□□□ 0.97
CLN3-214ENST00000565140 MFSD10Q14728 455 aa21.1■□□□□ 0.97
CLN3-214ENST00000565140 PTGISQ16647 500 aa21.1■□□□□ 0.97
CLN3-214ENST00000565140 KIAA0753Q2KHM9 967 aa21.1■□□□□ 0.97
CLN3-214ENST00000565140 RUFY3Q7L099 469 aa21.1■□□□□ 0.97
CLN3-214ENST00000565140 CYFIP1Q7L576 1253 aa21.1■□□□□ 0.97
CLN3-214ENST00000565140 SESTD1Q86VW0 696 aa21.1■□□□□ 0.97
CLN3-214ENST00000565140 RIC8AQ9NPQ8 531 aa21.1■□□□□ 0.97
CLN3-214ENST00000565140 MTMR10Q9NXD2 777 aa21.1■□□□□ 0.97
CLN3-214ENST00000565140 BARHL2Q9NY43 387 aa21.1■□□□□ 0.97
CLN3-214ENST00000565140 NID2Q14112 1375 aa21.1■□□□□ 0.97
CLN3-214ENST00000565140 KAT6AQ92794 2004 aa21.09■□□□□ 0.97
CLN3-214ENST00000565140 CDH23Q9H251 3354 aa21.09■□□□□ 0.97
CLN3-214ENST00000565140 CCDC196A0A1B0GTZ2 297 aa21.09■□□□□ 0.97
CLN3-214ENST00000565140 SPDYE3A6NKU9 549 aa21.09■□□□□ 0.97
CLN3-214ENST00000565140 ITGB5P18084 799 aa21.09■□□□□ 0.97
CLN3-214ENST00000565140 RASIP1Q5U651 963 aa21.09■□□□□ 0.97
CLN3-214ENST00000565140 FAM109BQ6ICB4 259 aaPredicted RBP21.09■□□□□ 0.97
CLN3-214ENST00000565140 C16orf70Q9BSU1 422 aa21.09■□□□□ 0.97
CLN3-214ENST00000565140 SMCO2A6NFE2 343 aa21.08■□□□□ 0.97
CLN3-214ENST00000565140 ATP9AO75110 1047 aa21.08■□□□□ 0.97
CLN3-214ENST00000565140 PDIA3P30101 505 aaKnown RBP21.08■□□□□ 0.97
CLN3-214ENST00000565140 EVCP57679 992 aa21.08■□□□□ 0.97
CLN3-214ENST00000565140 MYO9BQ13459 2157 aa21.08■□□□□ 0.97
CLN3-214ENST00000565140 TOB2Q14106 344 aaPredicted RBP21.08■□□□□ 0.97
CLN3-214ENST00000565140 NEDD9Q14511 834 aa21.08■□□□□ 0.97
CLN3-214ENST00000565140 PFKFB3Q16875 520 aaPredicted RBP21.08■□□□□ 0.97
CLN3-214ENST00000565140 PPP1R18Q6NYC8 613 aa21.08■□□□□ 0.97
CLN3-214ENST00000565140 PSRC1Q6PGN9 363 aaPredicted RBP21.08■□□□□ 0.97
CLN3-214ENST00000565140 METTL7BQ6UX53 244 aa21.08■□□□□ 0.97
CLN3-214ENST00000565140 NLRX1Q86UT6 975 aa21.08■□□□□ 0.97
CLN3-214ENST00000565140 C7orf31Q8N865 590 aa21.08■□□□□ 0.97
CLN3-214ENST00000565140 PGBD1Q96JS3 809 aa21.08■□□□□ 0.97
CLN3-214ENST00000565140 KATNAL1Q9BW62 490 aa21.08■□□□□ 0.97
CLN3-214ENST00000565140 GTF2IRD1Q9UHL9 959 aa21.08■□□□□ 0.97
CLN3-214ENST00000565140 NOD1Q9Y239 953 aa21.08■□□□□ 0.97
CLN3-214ENST00000565140 UBIAD1Q9Y5Z9 338 aa21.08■□□□□ 0.97
CLN3-214ENST00000565140 CHD9Q3L8U1 2897 aa21.07■□□□□ 0.96
CLN3-214ENST00000565140 hCG_1984214I3L0E3 225 aa21.07■□□□□ 0.96
CLN3-214ENST00000565140 ADAMTS3O15072 1205 aa21.07■□□□□ 0.96
CLN3-214ENST00000565140 FGBP02675 491 aa21.07■□□□□ 0.96
CLN3-214ENST00000565140 ADCY7P51828 1080 aa21.07■□□□□ 0.96
CLN3-214ENST00000565140 HIC1Q14526 733 aa21.07■□□□□ 0.96
CLN3-214ENST00000565140 NTRK3Q16288 839 aa21.07■□□□□ 0.96
CLN3-214ENST00000565140 PKN1Q16512 942 aa21.07■□□□□ 0.96
CLN3-214ENST00000565140 ZNF713Q8N859 430 aaPredicted RBP21.07■□□□□ 0.96
CLN3-214ENST00000565140 HERVK_113Q902F9 699 aa21.07■□□□□ 0.96
CLN3-214ENST00000565140 PHKBQ93100 1093 aa21.07■□□□□ 0.96
CLN3-214ENST00000565140 FAM161BQ96MY7 647 aa21.07■□□□□ 0.96
CLN3-214ENST00000565140 GPR20Q99678 358 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms