RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 THPOP40225 353 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 STXBP2Q15833 593 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 TRIM71Q2Q1W2 868 aaKnown RBP8.6□□□□□ -1.03
VPS4A-203ENST00000564399 HERC4Q5GLZ8 1057 aaPredicted RBP8.6□□□□□ -1.03
VPS4A-203ENST00000564399 RRP12Q5JTH9 1297 aaKnown RBP8.6□□□□□ -1.03
VPS4A-203ENST00000564399 TRAF7Q6Q0C0 670 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 FBXO11Q86XK2 927 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 RNF135Q8IUD6 432 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 SUGP1Q8IWZ8 645 aaKnown RBP8.6□□□□□ -1.03
VPS4A-203ENST00000564399 PRSS33Q8NF86 280 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 NSUN6Q8TEA1 469 aaKnown RBP8.6□□□□□ -1.03
VPS4A-203ENST00000564399 SEPT8Q92599 483 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 WNT8BQ93098 351 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 PBXIP1Q96AQ6 731 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 TAAR1Q96RJ0 339 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 TMEM47Q9BQJ4 181 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 FSD1Q9BTV5 496 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 ATG2AQ2TAZ0 1938 aa8.6□□□□□ -1.03
VPS4A-203ENST00000564399 WDR19Q8NEZ3 1342 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 STXBP3O00186 592 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 MBTPS2O43462 519 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 CSPG5O95196 566 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 CTNNB1P35222 781 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 LTBRP36941 435 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 HNRNPUQ00839 825 aaKnown RBP eCLIP8.59□□□□□ -1.03
VPS4A-203ENST00000564399 LAMC2Q13753 1193 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 COL19A1Q14993 1142 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 SMAD2Q15796 467 aaKnown RBP8.59□□□□□ -1.03
VPS4A-203ENST00000564399 IER5LQ5T953 404 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 RGS22Q8NE09 1264 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 TBC1D5Q92609 795 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 EDAQ92838 391 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 TOP1MTQ969P6 601 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 RMDN3Q96TC7 470 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 PRRX2Q99811 253 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 IFIH1Q9BYX4 1025 aaKnown RBP8.59□□□□□ -1.03
VPS4A-203ENST00000564399 IGFLR1Q9H665 355 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 DDX41Q9UJV9 622 aaKnown RBP8.59□□□□□ -1.03
VPS4A-203ENST00000564399 MRVI1Q9Y6F6 885 aa8.59□□□□□ -1.03
VPS4A-203ENST00000564399 MYO10Q9HD67 2058 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 TMEM221A6NGB7 291 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 M0R296 226 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 HAS3O00219 553 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 ORC4O43929 436 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 SORBS3O60504 671 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 GFRA3O60609 400 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 F2P00734 622 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 CTSHP09668 335 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 PDHBP11177 359 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 EIF2AK2P19525 551 aaKnown RBP8.58□□□□□ -1.04
VPS4A-203ENST00000564399 NOVP48745 357 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 DLX2Q07687 328 aaPredicted RBP8.58□□□□□ -1.04
VPS4A-203ENST00000564399 ZNF543Q08ER8 600 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 SMAD4Q13485 552 aaKnown RBP8.58□□□□□ -1.04
VPS4A-203ENST00000564399 PKN1Q16512 942 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 PLEKHG4Q58EX7 1191 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 ZMYM1Q5SVZ6 1142 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 ARHGEF16Q5VV41 709 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 TRIM67Q6ZTA4 783 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 BMP8AQ7Z5Y6 402 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 SERINC5Q86VE9 423 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 FIBCD1Q8N539 461 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 PPTC7Q8NI37 304 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 SYTL5Q8TDW5 730 aaPredicted RBP8.58□□□□□ -1.04
VPS4A-203ENST00000564399 ATP6V0A1Q93050 837 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 IL17RAQ96F46 866 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 IWS1Q96ST2 819 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 CD207Q9UJ71 328 aa8.58□□□□□ -1.04
VPS4A-203ENST00000564399 ABCB11O95342 1321 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 C17orf102A2RUQ5 167 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 GRM6O15303 877 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 PPFIA4O75335 1185 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 EIF3JO75822 258 aaKnown RBP8.57□□□□□ -1.04
VPS4A-203ENST00000564399 RB1P06400 928 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 NR3C2P08235 984 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 GOLGA8HP0CJ92 632 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 GTF2F1P35269 517 aaKnown RBP eCLIP8.57□□□□□ -1.04
VPS4A-203ENST00000564399 NDUFV1P49821 464 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 HYAL1Q12794 435 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 MKRN4PQ13434 485 aaPredicted RBP8.57□□□□□ -1.04
VPS4A-203ENST00000564399 HIC1Q14526 733 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 CTC1Q2NKJ3 1217 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 MCF2L2Q86YR7 1114 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 EMID1Q96A84 441 aaPredicted RBP8.57□□□□□ -1.04
VPS4A-203ENST00000564399 SPATA33Q96N06 139 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 C11orf84Q9BUA3 381 aaPredicted RBP8.57□□□□□ -1.04
VPS4A-203ENST00000564399 UBA5Q9GZZ9 404 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 LMAN2LQ9H0V9 348 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 CPVLQ9H3G5 476 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 FAM86C1Q9NVL1 165 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 C5orf42Q9H799 3197 aa8.57□□□□□ -1.04
VPS4A-203ENST00000564399 TTC3P53804 2025 aa8.56□□□□□ -1.04
VPS4A-203ENST00000564399 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.56□□□□□ -1.04
VPS4A-203ENST00000564399 DHX16O60231 1041 aaKnown RBP8.56□□□□□ -1.04
VPS4A-203ENST00000564399 TBX10O75333 385 aa8.56□□□□□ -1.04
VPS4A-203ENST00000564399 MYCLP12524 364 aaPredicted RBP8.56□□□□□ -1.04
VPS4A-203ENST00000564399 BMPR1AP36894 532 aa8.56□□□□□ -1.04
VPS4A-203ENST00000564399 FOXK2Q01167 660 aa8.56□□□□□ -1.04
VPS4A-203ENST00000564399 TCF15Q12870 199 aa8.56□□□□□ -1.04
VPS4A-203ENST00000564399 CDC37Q16543 378 aaPredicted RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms