RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 PSTPIP2Q9H939 334 aa14.95□□□□□ -0.02
CLK3-215ENST00000564353 QTRT2Q9H974 415 aaKnown RBP14.95□□□□□ -0.02
CLK3-215ENST00000564353 SIK3Q9Y2K2 1263 aa14.95□□□□□ -0.02
CLK3-215ENST00000564353 EIF3CLB5ME19 914 aaKnown RBP14.95□□□□□ -0.02
CLK3-215ENST00000564353 COASYQ13057 564 aa14.95□□□□□ -0.02
CLK3-215ENST00000564353 IKQ13123 557 aaPredicted RBP14.95□□□□□ -0.02
CLK3-215ENST00000564353 ZSCAN26Q16670 478 aa14.95□□□□□ -0.02
CLK3-215ENST00000564353 HSP90B2PQ58FF3 399 aa14.95□□□□□ -0.02
CLK3-215ENST00000564353 EIF3CQ99613 913 aaKnown RBP14.95□□□□□ -0.02
CLK3-215ENST00000564353 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.95□□□□□ -0.02
CLK3-215ENST00000564353 CUEDC2Q9H467 287 aa14.95□□□□□ -0.02
CLK3-215ENST00000564353 PCDHA12Q9UN75 941 aa14.95□□□□□ -0.02
CLK3-215ENST00000564353 DDX60LQ5H9U9 1706 aaKnown RBP14.94□□□□□ -0.02
CLK3-215ENST00000564353 POTEFA5A3E0 1075 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 TRIM37O94972 964 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 GDF11O95390 407 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 MYL1P05976 194 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 POTEIP0CG38 1075 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 PLCG2P16885 1265 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 VAV2P52735 878 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 POTEGQ6S5H5 508 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 POTEEQ6S8J3 1075 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 PROCA1Q8NCQ7 364 aaPredicted RBP14.94□□□□□ -0.02
CLK3-215ENST00000564353 NOC3LQ8WTT2 800 aaKnown RBP14.94□□□□□ -0.02
CLK3-215ENST00000564353 LRRC1Q9BTT6 524 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 IKZF4Q9H2S9 585 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 GOLPH3Q9H4A6 298 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 PANK4Q9NVE7 773 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 TTLL1O95922 423 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 KRT18P05783 430 aaKnown RBP14.94□□□□□ -0.02
CLK3-215ENST00000564353 SHMT1P34896 483 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 POLR2FP61218 127 aaKnown RBP14.94□□□□□ -0.02
CLK3-215ENST00000564353 ZNF543Q08ER8 600 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 HERC4Q5GLZ8 1057 aaPredicted RBP14.94□□□□□ -0.02
CLK3-215ENST00000564353 HNRNPLLQ8WVV9 542 aaKnown RBP14.94□□□□□ -0.02
CLK3-215ENST00000564353 NUP58Q9BVL2 599 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 FAM204AQ9H8W3 233 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 DMGDHQ9UI17 866 aaKnown RBP14.94□□□□□ -0.02
CLK3-215ENST00000564353 LCMT1Q9UIC8 334 aa14.94□□□□□ -0.02
CLK3-215ENST00000564353 POTEB2H3BUK9 544 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 MAGEA1P43355 309 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 CYP4A11Q02928 519 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 DNAJC21Q5F1R6 531 aaKnown RBP14.93□□□□□ -0.02
CLK3-215ENST00000564353 PAPD7Q5XG87 772 aaKnown RBP14.93□□□□□ -0.02
CLK3-215ENST00000564353 LRRC55Q6ZSA7 311 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 ERGIC2Q96RQ1 377 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 ZC3H12CQ9C0D7 883 aaKnown RBP14.93□□□□□ -0.02
CLK3-215ENST00000564353 PPEF1O14829 653 aaPredicted RBP14.93□□□□□ -0.02
CLK3-215ENST00000564353 FTCDO95954 541 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 ACTN1P12814 892 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 PSMC6P62333 389 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 KCNMA1Q12791 1236 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 GPS2Q13227 327 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 MSL1Q68DK7 614 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 TTC19Q6DKK2 380 aaPredicted RBP14.93□□□□□ -0.02
CLK3-215ENST00000564353 CDC42EP5Q6NZY7 148 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 SPICE1Q8N0Z3 855 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 MTMR8Q96EF0 704 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 LSM14BQ9BX40 385 aaKnown RBP14.93□□□□□ -0.02
CLK3-215ENST00000564353 PNMA6FA0A0J9YX94 578 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 ESYT3A0FGR9 886 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 EIF3JO75822 258 aaKnown RBP14.93□□□□□ -0.02
CLK3-215ENST00000564353 CASP5P51878 434 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 MAN2A1Q16706 1144 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 MYOCDQ8IZQ8 938 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 CERKQ8TCT0 537 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 CUL5Q93034 780 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 P2RX7Q99572 595 aaKnown RBP14.93□□□□□ -0.02
CLK3-215ENST00000564353 PLAGL2Q9UPG8 496 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 PCDHA1Q9Y5I3 950 aa14.93□□□□□ -0.02
CLK3-215ENST00000564353 ZSCAN5CA6NGD5 496 aaPredicted RBP14.92□□□□□ -0.02
CLK3-215ENST00000564353 SFI1A8K8P3 1242 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 RNF40O75150 1001 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 HOXA13P31271 388 aaPredicted RBP14.92□□□□□ -0.02
CLK3-215ENST00000564353 PABPC4Q13310 644 aaKnown RBP eCLIP14.92□□□□□ -0.02
CLK3-215ENST00000564353 CRY2Q49AN0 593 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 PRR16Q569H4 304 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 GPBP1Q86WP2 473 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 PACSIN1Q9BY11 444 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 GGCXP38435 758 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 FXR2P51116 673 aaKnown RBP eCLIP14.92□□□□□ -0.02
CLK3-215ENST00000564353 GABPAQ06546 454 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 RAPGEF1Q13905 1077 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 QRICH1Q2TAL8 776 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 ASPRV1Q53RT3 343 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 FAM26FQ5R3K3 315 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 CREG2Q8IUH2 290 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 CCDC170Q8IYT3 715 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 CYP2W1Q8TAV3 490 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 DNAJC19Q96DA6 116 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 SH2D4AQ9H788 454 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 CALCOCO1Q9P1Z2 691 aa14.92□□□□□ -0.02
CLK3-215ENST00000564353 GAKO14976 1311 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 ONECUT3O60422 494 aaPredicted RBP14.91□□□□□ -0.02
CLK3-215ENST00000564353 TXLNBQ8N3L3 684 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 FAM133AQ8N9E0 248 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 BAP1Q92560 729 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 SELENOOQ9BVL4 669 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 RAB34Q9BZG1 259 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 DNAJC18Q9H819 358 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms