RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 ASXL2Q76L83 1435 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 RFXAPO00287 272 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 KRIT1O00522 736 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 SGSM2O43147 1006 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 APPP05067 770 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 LINC00310P59036 64 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 PAK1Q13153 545 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 SQSTM1Q13501 440 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 KCNA10Q16322 511 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 FNDC3BQ53EP0 1204 aaKnown RBP4.97□□□□□ -1.61
VPS35-203ENST00000562420 ANKLE2Q86XL3 938 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 SH3TC2Q8TF17 1288 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 ALG3Q92685 438 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 CHAMP1Q96JM3 812 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 TOX2Q96NM4 488 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 SMOC1Q9H4F8 434 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 SLC6A20Q9NP91 592 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 BTG4Q9NY30 223 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 HSPBP1Q9NZL4 362 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 SMG5Q9UPR3 1016 aaKnown RBP4.97□□□□□ -1.61
VPS35-203ENST00000562420 IRAK3Q9Y616 596 aa4.97□□□□□ -1.61
VPS35-203ENST00000562420 RFPL3O75679 317 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 NPTXRO95502 500 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 SOD2P04179 222 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 ASGR2P07307 311 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 PMLP29590 882 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 EPHB3P54753 998 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 CACNB2Q08289 660 aaPredicted RBP4.96□□□□□ -1.62
VPS35-203ENST00000562420 SPIRE1Q08AE8 756 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 STEAP3Q658P3 488 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 OTOP3Q7RTS5 596 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 B3GNT8Q7Z7M8 397 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 MTDHQ86UE4 582 aaKnown RBP4.96□□□□□ -1.62
VPS35-203ENST00000562420 TMEM151BQ8IW70 566 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 TRIM48Q8IWZ4 208 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 FAM126BQ8IXS8 530 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 UHMK1Q8TAS1 419 aaKnown RBP4.96□□□□□ -1.62
VPS35-203ENST00000562420 KCNK12Q9HB15 430 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 USP35Q9P2H5 1018 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 SFMBT1Q9UHJ3 866 aa4.96□□□□□ -1.62
VPS35-203ENST00000562420 BLACEA4D250 179 aa4.95□□□□□ -1.62
VPS35-203ENST00000562420 GSTA4O15217 222 aa4.95□□□□□ -1.62
VPS35-203ENST00000562420 BUB1BO60566 1050 aaPredicted RBP4.95□□□□□ -1.62
VPS35-203ENST00000562420 CFPP27918 469 aa4.95□□□□□ -1.62
VPS35-203ENST00000562420 ZNF385BQ569K4 471 aa4.95□□□□□ -1.62
VPS35-203ENST00000562420 ETV3LQ6ZN32 361 aa4.95□□□□□ -1.62
VPS35-203ENST00000562420 NLGN1Q8N2Q7 840 aa4.95□□□□□ -1.62
VPS35-203ENST00000562420 RNPC3Q96LT9 517 aaKnown RBP4.95□□□□□ -1.62
VPS35-203ENST00000562420 SGPP1Q9BX95 441 aa4.95□□□□□ -1.62
VPS35-203ENST00000562420 SLC52A2Q9HAB3 445 aa4.95□□□□□ -1.62
VPS35-203ENST00000562420 PALD1Q9ULE6 856 aa4.95□□□□□ -1.62
VPS35-203ENST00000562420 CNOT6Q9ULM6 557 aaKnown RBP4.95□□□□□ -1.62
VPS35-203ENST00000562420 TRAF6Q9Y4K3 522 aa4.95□□□□□ -1.62
VPS35-203ENST00000562420 PCDHB4Q9Y5E5 795 aa4.95□□□□□ -1.62
VPS35-203ENST00000562420 HCFC2Q9Y5Z7 792 aa4.95□□□□□ -1.62
VPS35-203ENST00000562420 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.94□□□□□ -1.62
VPS35-203ENST00000562420 TCRBV5S2A0A599 114 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 ENPP3O14638 875 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 CENPBP07199 599 aaPredicted RBP4.94□□□□□ -1.62
VPS35-203ENST00000562420 GNAT1P11488 350 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 EPHA5P54756 1037 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 HTRA3P83110 453 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 GUCY1A3Q02108 690 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 C16orf59Q7L2K0 433 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 MILR1Q7Z6M3 343 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 ZC3H18Q86VM9 953 aaKnown RBP4.94□□□□□ -1.62
VPS35-203ENST00000562420 FAM129CQ86XR2 697 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 HOMER1Q86YM7 354 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 TMEFF1Q8IYR6 380 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 PCDH19Q8TAB3 1148 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 CELF4Q9BZC1 486 aaKnown RBP4.94□□□□□ -1.62
VPS35-203ENST00000562420 IPPKQ9H8X2 491 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 TRIM39Q9HCM9 518 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 MYOTQ9UBF9 498 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 PPARGC1AQ9UBK2 798 aaKnown RBP4.94□□□□□ -1.62
VPS35-203ENST00000562420 ASH2LQ9UBL3 628 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 SIT1Q9Y3P8 196 aa4.94□□□□□ -1.62
VPS35-203ENST00000562420 B4E1Z4 1266 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 NPIPB6E9PJ23 425 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 CRTAMO95727 393 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 ATF2P15336 505 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 TCEA2Q15560 299 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 FAM47CQ5HY64 1035 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 CIAPIN1Q6FI81 312 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 LCNL1Q6ZST4 164 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 C16orf86Q6ZW13 317 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 C1QL4Q86Z23 238 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 SIAH1Q8IUQ4 282 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 SLC7A14Q8TBB6 771 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 ZSCAN18Q8TBC5 510 aaPredicted RBP4.93□□□□□ -1.62
VPS35-203ENST00000562420 PIP4K2CQ8TBX8 421 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 APPBP2Q92624 585 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 FBXW5Q969U6 566 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 DACT3Q96B18 629 aaPredicted RBP4.93□□□□□ -1.62
VPS35-203ENST00000562420 MAGEB10Q96LZ2 347 aaPredicted RBP4.93□□□□□ -1.62
VPS35-203ENST00000562420 RXFP1Q9HBX9 757 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 EPB41L4AQ9HCS5 686 aaPredicted RBP4.93□□□□□ -1.62
VPS35-203ENST00000562420 INTS7Q9NVH2 962 aaKnown RBP4.93□□□□□ -1.62
VPS35-203ENST00000562420 DTLQ9NZJ0 730 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 NDOR1Q9UHB4 597 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms