RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 SORBS3O60504 671 aa14.49□□□□□ -0.09
SNX1-209ENST00000559961 PPP1R11O60927 126 aaPredicted RBP14.49□□□□□ -0.09
SNX1-209ENST00000559961 ZNF286BP0CG31 522 aa14.49□□□□□ -0.09
SNX1-209ENST00000559961 RABGGTBP53611 331 aa14.49□□□□□ -0.09
SNX1-209ENST00000559961 PTK7Q13308 1070 aa14.49□□□□□ -0.09
SNX1-209ENST00000559961 GDF6Q6KF10 455 aaPredicted RBP14.49□□□□□ -0.09
SNX1-209ENST00000559961 LRRC8DQ7L1W4 858 aa14.49□□□□□ -0.09
SNX1-209ENST00000559961 CDHR1Q96JP9 859 aa14.49□□□□□ -0.09
SNX1-209ENST00000559961 ESYT1Q9BSJ8 1104 aa14.49□□□□□ -0.09
SNX1-209ENST00000559961 USP26Q9BXU7 913 aa14.49□□□□□ -0.09
SNX1-209ENST00000559961 ZNF215Q9UL58 517 aaPredicted RBP14.49□□□□□ -0.09
SNX1-209ENST00000559961 OPLAHO14841 1288 aa14.48□□□□□ -0.09
SNX1-209ENST00000559961 FIBPO43427 364 aa14.48□□□□□ -0.09
SNX1-209ENST00000559961 TLL1O43897 1013 aa14.48□□□□□ -0.09
SNX1-209ENST00000559961 F2P00734 622 aa14.48□□□□□ -0.09
SNX1-209ENST00000559961 LIFRP42702 1097 aa14.48□□□□□ -0.09
SNX1-209ENST00000559961 FGD1P98174 961 aa14.48□□□□□ -0.09
SNX1-209ENST00000559961 IKBKEQ14164 716 aa14.48□□□□□ -0.09
SNX1-209ENST00000559961 CENPQQ7L2Z9 268 aaPredicted RBP14.48□□□□□ -0.09
SNX1-209ENST00000559961 KAT2BQ92831 832 aa14.48□□□□□ -0.09
SNX1-209ENST00000559961 COL25A1Q9BXS0 654 aaPredicted RBP14.48□□□□□ -0.09
SNX1-209ENST00000559961 PSTPIP2Q9H939 334 aa14.48□□□□□ -0.09
SNX1-209ENST00000559961 LY9Q9HBG7 655 aa14.48□□□□□ -0.09
SNX1-209ENST00000559961 SENP2Q9HC62 589 aa14.48□□□□□ -0.09
SNX1-209ENST00000559961 RTEL1Q9NZ71 1219 aa14.48□□□□□ -0.09
SNX1-209ENST00000559961 YBX2Q9Y2T7 364 aaKnown RBP14.48□□□□□ -0.09
SNX1-209ENST00000559961 EMSYQ7Z589 1322 aa14.47□□□□□ -0.09
SNX1-209ENST00000559961 C17orf102A2RUQ5 167 aa14.47□□□□□ -0.09
SNX1-209ENST00000559961 SPDYE3A6NKU9 549 aa14.47□□□□□ -0.09
SNX1-209ENST00000559961 H3BRB1 525 aa14.47□□□□□ -0.09
SNX1-209ENST00000559961 SLC27A2O14975 620 aa14.47□□□□□ -0.09
SNX1-209ENST00000559961 CYTH3O43739 400 aa14.47□□□□□ -0.09
SNX1-209ENST00000559961 CKBP12277 381 aa14.47□□□□□ -0.09
SNX1-209ENST00000559961 UBA1P22314 1058 aaKnown RBP14.47□□□□□ -0.09
SNX1-209ENST00000559961 ANTXR2P58335 489 aa14.47□□□□□ -0.09
SNX1-209ENST00000559961 SKIV2LQ15477 1246 aaKnown RBP14.47□□□□□ -0.09
SNX1-209ENST00000559961 CCDC85BQ15834 202 aaPredicted RBP14.47□□□□□ -0.09
SNX1-209ENST00000559961 CREB3L3Q68CJ9 461 aa14.47□□□□□ -0.09
SNX1-209ENST00000559961 CNKSR3Q6P9H4 555 aa14.47□□□□□ -0.09
SNX1-209ENST00000559961 MICALL1Q8N3F8 863 aa14.47□□□□□ -0.09
SNX1-209ENST00000559961 MYL10Q9BUA6 226 aa14.47□□□□□ -0.09
SNX1-209ENST00000559961 TUT1Q9H6E5 874 aaKnown RBP14.47□□□□□ -0.09
SNX1-209ENST00000559961 LAMA4Q16363 1823 aa14.47□□□□□ -0.09
SNX1-209ENST00000559961 ABHD14A-ACY1A0A1B0GW23 586 aa14.46□□□□□ -0.09
SNX1-209ENST00000559961 SH2B2O14492 632 aaPredicted RBP14.46□□□□□ -0.09
SNX1-209ENST00000559961 THPOP40225 353 aa14.46□□□□□ -0.09
SNX1-209ENST00000559961 KRT32Q14532 448 aa14.46□□□□□ -0.09
SNX1-209ENST00000559961 HSDL1Q3SXM5 330 aa14.46□□□□□ -0.09
SNX1-209ENST00000559961 TJAP1Q5JTD0 557 aa14.46□□□□□ -0.09
SNX1-209ENST00000559961 PCNX4Q63HM2 1172 aa14.46□□□□□ -0.09
SNX1-209ENST00000559961 METTL7BQ6UX53 244 aa14.46□□□□□ -0.09
SNX1-209ENST00000559961 CYFIP1Q7L576 1253 aa14.46□□□□□ -0.09
SNX1-209ENST00000559961 HERC6Q8IVU3 1022 aa14.46□□□□□ -0.09
SNX1-209ENST00000559961 FANCBQ8NB91 859 aa14.46□□□□□ -0.09
SNX1-209ENST00000559961 ATXN2LQ8WWM7 1075 aaKnown RBP14.46□□□□□ -0.09
SNX1-209ENST00000559961 TNPO1Q92973 898 aaKnown RBP14.46□□□□□ -0.09
SNX1-209ENST00000559961 ATP6V0A1Q93050 837 aa14.46□□□□□ -0.09
SNX1-209ENST00000559961 LSG1Q9H089 658 aaKnown RBP14.46□□□□□ -0.09
SNX1-209ENST00000559961 RBM28Q9NW13 759 aaKnown RBP14.46□□□□□ -0.09
SNX1-209ENST00000559961 LRRC37A2A6NM11 1700 aa14.46□□□□□ -0.1
SNX1-209ENST00000559961 RSPH10B2B2RC85 870 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 SPATA31C2B4DYI2 1134 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 HAS3O00219 553 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 PIK3CDO00329 1044 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 RGS20O76081 388 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 CA3P07451 260 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 RSPH10BP0C881 870 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 MYOGP15173 224 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 ICAM3P32942 547 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 AAK1Q2M2I8 961 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 BMP2KLQ5H9B9 411 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 USP17L6PQ6QN14 398 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 HEATR3Q7Z4Q2 680 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 CCDC82Q8N4S0 544 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 IL31RAQ8NI17 732 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 ZFP91Q96JP5 570 aaPredicted RBP14.45□□□□□ -0.1
SNX1-209ENST00000559961 NEK1Q96PY6 1258 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 SENP7Q9BQF6 1050 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 THEGQ9P2T0 379 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 NAP1L2Q9ULW6 460 aaPredicted RBP14.45□□□□□ -0.1
SNX1-209ENST00000559961 TAF6LQ9Y6J9 622 aa14.45□□□□□ -0.1
SNX1-209ENST00000559961 LGALS2P05162 132 aa14.44□□□□□ -0.1
SNX1-209ENST00000559961 HMGB1P09429 215 aaKnown RBP14.44□□□□□ -0.1
SNX1-209ENST00000559961 HOXD8P13378 290 aaPredicted RBP14.44□□□□□ -0.1
SNX1-209ENST00000559961 MRPS5P82675 430 aaKnown RBP14.44□□□□□ -0.1
SNX1-209ENST00000559961 SP2Q02086 613 aa14.44□□□□□ -0.1
SNX1-209ENST00000559961 SP4Q02446 784 aa14.44□□□□□ -0.1
SNX1-209ENST00000559961 RBL2Q08999 1139 aa14.44□□□□□ -0.1
SNX1-209ENST00000559961 NECTIN1Q15223 517 aa14.44□□□□□ -0.1
SNX1-209ENST00000559961 UTP14CQ5TAP6 766 aaKnown RBP14.44□□□□□ -0.1
SNX1-209ENST00000559961 RSPH3Q86UC2 560 aa14.44□□□□□ -0.1
SNX1-209ENST00000559961 MICU3Q86XE3 530 aa14.44□□□□□ -0.1
SNX1-209ENST00000559961 INPP4AQ96PE3 977 aaPredicted RBP14.44□□□□□ -0.1
SNX1-209ENST00000559961 MAFGO15525 162 aa14.43□□□□□ -0.1
SNX1-209ENST00000559961 CAND2O75155 1236 aa14.43□□□□□ -0.1
SNX1-209ENST00000559961 CDC45O75419 566 aa14.43□□□□□ -0.1
SNX1-209ENST00000559961 LGR5O75473 907 aa14.43□□□□□ -0.1
SNX1-209ENST00000559961 PLEKHA8P1O95397 391 aa14.43□□□□□ -0.1
SNX1-209ENST00000559961 AMHP03971 560 aa14.43□□□□□ -0.1
SNX1-209ENST00000559961 SMIM10L2AP0DMW4 78 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms