RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 MAD2L2Q9UI95 211 aa10.64□□□□□ -0.71
HDDC3-204ENST00000559834 INSL6Q9Y581 213 aa10.64□□□□□ -0.71
HDDC3-204ENST00000559834 U3KPZ7 1027 aaPredicted RBP10.64□□□□□ -0.71
HDDC3-204ENST00000559834 TRIP12Q14669 1992 aaPredicted RBP10.64□□□□□ -0.71
HDDC3-204ENST00000559834 NCOR1O75376 2440 aa10.64□□□□□ -0.71
HDDC3-204ENST00000559834 PNMA6FA0A0J9YX94 578 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 RSPH10B2B2RC85 870 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 IFIT3O14879 490 aaKnown RBP10.63□□□□□ -0.71
HDDC3-204ENST00000559834 LPXNO60711 386 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 ARHGEF15O94989 841 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 GGPS1O95749 300 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 AMHP03971 560 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 RSPH10BP0C881 870 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 ZNF286BP0CG31 522 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 GNAT1P11488 350 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 HOXD8P13378 290 aaPredicted RBP10.63□□□□□ -0.71
HDDC3-204ENST00000559834 HOXA13P31271 388 aaPredicted RBP10.63□□□□□ -0.71
HDDC3-204ENST00000559834 THPOP40225 353 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 ERVK-21P61565 698 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 DEFB103AP81534 67 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 SART3Q15020 963 aaKnown RBP10.63□□□□□ -0.71
HDDC3-204ENST00000559834 SEC23AQ15436 765 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 HSDL1Q3SXM5 330 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 KRT40Q6A162 431 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 FCHSD1Q86WN1 690 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 RUFY2Q8WXA3 655 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 USP26Q9BXU7 913 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 RIOX1Q9H6W3 641 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 SUGCTQ9HAC7 445 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 TET1Q8NFU7 2136 aa10.63□□□□□ -0.71
HDDC3-204ENST00000559834 PRUNE2Q8WUY3 3088 aa10.62□□□□□ -0.71
HDDC3-204ENST00000559834 C17orf102A2RUQ5 167 aa10.62□□□□□ -0.71
HDDC3-204ENST00000559834 LCHNA4D1U4 455 aa10.62□□□□□ -0.71
HDDC3-204ENST00000559834 H3BRB1 525 aa10.62□□□□□ -0.71
HDDC3-204ENST00000559834 NOP56O00567 594 aaKnown RBP10.62□□□□□ -0.71
HDDC3-204ENST00000559834 OPLAHO14841 1288 aa10.62□□□□□ -0.71
HDDC3-204ENST00000559834 PPP1R11O60927 126 aaPredicted RBP10.62□□□□□ -0.71
HDDC3-204ENST00000559834 STAM2O75886 525 aa10.62□□□□□ -0.71
HDDC3-204ENST00000559834 RGS20O76081 388 aa10.62□□□□□ -0.71
HDDC3-204ENST00000559834 ZNF200P98182 395 aaPredicted RBP10.62□□□□□ -0.71
HDDC3-204ENST00000559834 NEDD9Q14511 834 aa10.62□□□□□ -0.71
HDDC3-204ENST00000559834 GRM4Q14833 912 aa10.62□□□□□ -0.71
HDDC3-204ENST00000559834 TRIM71Q2Q1W2 868 aaKnown RBP10.62□□□□□ -0.71
HDDC3-204ENST00000559834 GNPTABQ3T906 1256 aa10.62□□□□□ -0.71
HDDC3-204ENST00000559834 TMCO2Q7Z6W1 182 aaPredicted RBP10.62□□□□□ -0.71
HDDC3-204ENST00000559834 RALYLQ86SE5 291 aaKnown RBP10.62□□□□□ -0.71
HDDC3-204ENST00000559834 SERINC5Q86VE9 423 aa10.62□□□□□ -0.71
HDDC3-204ENST00000559834 HOMER1Q86YM7 354 aa10.62□□□□□ -0.71
HDDC3-204ENST00000559834 ATP6V0A1Q93050 837 aa10.62□□□□□ -0.71
HDDC3-204ENST00000559834 C16orf70Q9BSU1 422 aa10.62□□□□□ -0.71
HDDC3-204ENST00000559834 TUT1Q9H6E5 874 aaKnown RBP10.62□□□□□ -0.71
HDDC3-204ENST00000559834 TCF20Q9UGU0 1960 aaKnown RBP10.61□□□□□ -0.71
HDDC3-204ENST00000559834 LINC01553A4QN01 128 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 SORBS3O60504 671 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 CAND2O75155 1236 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 UBA1P22314 1058 aaKnown RBP10.61□□□□□ -0.71
HDDC3-204ENST00000559834 SP2Q02086 613 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 FAM117BQ6P1L5 589 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 TRAF7Q6Q0C0 670 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 CYB5R4Q7L1T6 521 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 CATIPQ7Z7H3 387 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 DBF4BQ8NFT6 615 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 NCOA7Q8NI08 942 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 GDPD5Q8WTR4 605 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 SEPT8Q92599 483 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 PIGSQ96S52 555 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 MTUS1Q9ULD2 1270 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 CDH23Q9H251 3354 aa10.61□□□□□ -0.71
HDDC3-204ENST00000559834 KIAA1217Q5T5P2 1943 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 SPATA31C2B4DYI2 1134 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 SMIM10L2AP0DMW4 78 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 SMIM10L2BP0DMW5 78 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 ICAM3P32942 547 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 MBTPS1Q14703 1052 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 WTAPQ15007 396 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 PTPROQ16827 1216 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 TCTN1Q2MV58 587 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 PLEKHG4Q58EX7 1191 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 XRRA1Q6P2D8 792 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.6□□□□□ -0.71
HDDC3-204ENST00000559834 MYOCDQ8IZQ8 938 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 FBXO22Q8NEZ5 403 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 CUL5Q93034 780 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 WNT8BQ93098 351 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 FAM122AQ96E09 287 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 SAMD11Q96NU1 681 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 RNPEPQ9H4A4 650 aa10.6□□□□□ -0.71
HDDC3-204ENST00000559834 EYSQ5T1H1 3165 aa10.59□□□□□ -0.71
HDDC3-204ENST00000559834 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.59□□□□□ -0.71
HDDC3-204ENST00000559834 FIBPO43427 364 aa10.59□□□□□ -0.71
HDDC3-204ENST00000559834 LGALS2P05162 132 aa10.59□□□□□ -0.71
HDDC3-204ENST00000559834 CYP21A2P08686 494 aa10.59□□□□□ -0.71
HDDC3-204ENST00000559834 KIF5BP33176 963 aa10.59□□□□□ -0.71
HDDC3-204ENST00000559834 HTRA4P83105 476 aaPredicted RBP10.59□□□□□ -0.71
HDDC3-204ENST00000559834 TROAPQ12815 778 aa10.59□□□□□ -0.71
HDDC3-204ENST00000559834 HIC1Q14526 733 aa10.59□□□□□ -0.71
HDDC3-204ENST00000559834 TMEM31Q5JXX7 168 aa10.59□□□□□ -0.71
HDDC3-204ENST00000559834 METTL7BQ6UX53 244 aa10.59□□□□□ -0.71
HDDC3-204ENST00000559834 SPRED2Q7Z698 418 aa10.59□□□□□ -0.71
HDDC3-204ENST00000559834 NLRX1Q86UT6 975 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms