RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 PHIPQ8WWQ0 1821 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 SPDYE16A6NNV3 312 aaPredicted RBP14.2□□□□□ -0.14
USP3-213ENST00000559711 CXCL11O14625 94 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 SPATA31C1P0DKV0 1188 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 PRCPP42785 496 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 ASIC1P78348 528 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 PPP2R5CQ13362 524 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 COBLL1Q53SF7 1204 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 PCNX4Q63HM2 1172 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 SNRNP48Q6IEG0 339 aaKnown RBP14.2□□□□□ -0.14
USP3-213ENST00000559711 KLHL10Q6JEL2 608 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 RNF207Q6ZRF8 634 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 CATSPER3Q86XQ3 398 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 DRC7Q8IY82 874 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 CNKSR2Q8WXI2 1034 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 POLR3CQ9BUI4 534 aaPredicted RBP14.2□□□□□ -0.14
USP3-213ENST00000559711 TEX13BQ9BXU2 312 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 RNF146Q9NTX7 359 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 KIAA1024Q9UPX6 916 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 GDAQ9Y2T3 454 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 POLR2AP24928 1970 aaKnown RBP14.2□□□□□ -0.14
USP3-213ENST00000559711 A0A0G2JLL6 359 aaPredicted RBP14.2□□□□□ -0.14
USP3-213ENST00000559711 POTEB3A0JP26 581 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 SPDYE5A6NIY4 337 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 CBFA2T2O43439 604 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 ITGB5P18084 799 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 HOXA7P31268 230 aaPredicted RBP14.2□□□□□ -0.14
USP3-213ENST00000559711 PAK1Q13153 545 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 DHX8Q14562 1220 aaKnown RBP14.2□□□□□ -0.14
USP3-213ENST00000559711 LRCH2Q5VUJ6 765 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 NCAPH2Q6IBW4 605 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 POTEBQ6S5H4 581 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 B3GNT9Q6UX72 402 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 UNC13DQ70J99 1090 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 PRRT2Q7Z6L0 340 aaPredicted RBP14.2□□□□□ -0.14
USP3-213ENST00000559711 PROCA1Q8NCQ7 364 aaPredicted RBP14.2□□□□□ -0.14
USP3-213ENST00000559711 CLMNQ96JQ2 1002 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 TAAR1Q96RJ0 339 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 ELP3Q9H9T3 547 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 EXOC1Q9NV70 894 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 KCNH4Q9UQ05 1017 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 UBIAD1Q9Y5Z9 338 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.2□□□□□ -0.14
USP3-213ENST00000559711 SYNRGQ9UMZ2 1314 aa14.2□□□□□ -0.14
USP3-213ENST00000559711 IRF6O14896 467 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 PLA2G4BP0C869 781 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 ARP10275 920 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 PPP1R2P41236 205 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 STX17P56962 302 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 UBASH3AP57075 661 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 MRPS9P82933 396 aaKnown RBP14.19□□□□□ -0.14
USP3-213ENST00000559711 PDE4DQ08499 809 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 EAPPQ56P03 285 aaPredicted RBP14.19□□□□□ -0.14
USP3-213ENST00000559711 TREML2Q5T2D2 321 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 CDKAL1Q5VV42 579 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 SLC30A10Q6XR72 485 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 CCDC186Q7Z3E2 898 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 IL31RAQ8NI17 732 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 DDX12PQ92771 950 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 RIT2Q99578 217 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 HSD17B14Q9BPX1 270 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 ZNF577Q9BSK1 485 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 RRAGDQ9NQL2 400 aaPredicted RBP14.19□□□□□ -0.14
USP3-213ENST00000559711 SAMSN1Q9NSI8 373 aaKnown RBP14.19□□□□□ -0.14
USP3-213ENST00000559711 NRBP1Q9UHY1 535 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 CTNND2Q9UQB3 1225 aa14.19□□□□□ -0.14
USP3-213ENST00000559711 PAPPA2Q9BXP8 1791 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 E9PMD0 336 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 EML1O00423 815 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 GAS7O60861 476 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 SERPINC1P01008 464 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 EHHADHQ08426 723 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 STK4Q13043 487 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 PPIL2Q13356 520 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 STIM1Q13586 685 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 BAATQ14032 418 aaPredicted RBP14.18□□□□□ -0.14
USP3-213ENST00000559711 LDLRAD1Q5T700 205 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 XRRA1Q6P2D8 792 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 NSMFQ6X4W1 530 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 LBX2Q6XYB7 198 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 MOB2Q70IA6 237 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 ARMC9Q7Z3E5 817 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 NELFBQ8WX92 580 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 DNAJC19Q96DA6 116 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 DHTKD1Q96HY7 919 aaPredicted RBP14.18□□□□□ -0.14
USP3-213ENST00000559711 RMDN3Q96TC7 470 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 EIF2AK1Q9BQI3 630 aaKnown RBP14.18□□□□□ -0.14
USP3-213ENST00000559711 PDCD2LQ9BRP1 358 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 WDR11Q9BZH6 1224 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 JADE2Q9NQC1 790 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 RLFQ13129 1914 aa14.18□□□□□ -0.14
USP3-213ENST00000559711 IPO5O00410 1097 aaKnown RBP14.17□□□□□ -0.14
USP3-213ENST00000559711 CDK11BP21127 795 aaKnown RBP14.17□□□□□ -0.14
USP3-213ENST00000559711 MUTP22033 750 aa14.17□□□□□ -0.14
USP3-213ENST00000559711 MSNP26038 577 aaKnown RBP14.17□□□□□ -0.14
USP3-213ENST00000559711 SLC12A3P55017 1021 aa14.17□□□□□ -0.14
USP3-213ENST00000559711 PSMD2Q13200 908 aa14.17□□□□□ -0.14
USP3-213ENST00000559711 PGM5Q15124 567 aa14.17□□□□□ -0.14
USP3-213ENST00000559711 CCDC144BQ3MJ40 725 aa14.17□□□□□ -0.14
USP3-213ENST00000559711 POTEEQ6S8J3 1075 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms