RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 MAP4K1Q92918 833 aa6□□□□□ -1.45
LDLR-209ENST00000558528 SNX21Q969T3 373 aa6□□□□□ -1.45
LDLR-209ENST00000558528 CNTNAP3BQ96NU0 1288 aa6□□□□□ -1.45
LDLR-209ENST00000558528 PNMA5Q96PV4 448 aa6□□□□□ -1.45
LDLR-209ENST00000558528 INSM2Q96T92 566 aaPredicted RBP6□□□□□ -1.45
LDLR-209ENST00000558528 NOL10Q9BSC4 688 aaKnown RBP6□□□□□ -1.45
LDLR-209ENST00000558528 CNTNAP3Q9BZ76 1288 aa6□□□□□ -1.45
LDLR-209ENST00000558528 NACAP1Q9BZK3 213 aa6□□□□□ -1.45
LDLR-209ENST00000558528 ZNF700Q9H0M5 742 aa6□□□□□ -1.45
LDLR-209ENST00000558528 INTS7Q9NVH2 962 aaKnown RBP6□□□□□ -1.45
LDLR-209ENST00000558528 PCDHB14Q9Y5E9 798 aa6□□□□□ -1.45
LDLR-209ENST00000558528 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6□□□□□ -1.45
LDLR-209ENST00000558528 SCN7AQ01118 1682 aa6□□□□□ -1.45
LDLR-209ENST00000558528 ADAMTSL1Q8N6G6 1762 aa6□□□□□ -1.45
LDLR-209ENST00000558528 SALL1Q9NSC2 1324 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 TRIOBPQ9H2D6 2365 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 MED23Q9ULK4 1368 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 A0A087X0B3 334 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 PLD2O14939 933 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 EIF4EBP3O60516 100 aaPredicted RBP5.99□□□□□ -1.45
LDLR-209ENST00000558528 PAGE1O75459 146 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 IDH1O75874 414 aaKnown RBP5.99□□□□□ -1.45
LDLR-209ENST00000558528 BAG3O95817 575 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 MYL1P05976 194 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 FAM157BP0CG42 384 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 IL1R1P14778 569 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 POU3F3P20264 500 aaPredicted RBP5.99□□□□□ -1.45
LDLR-209ENST00000558528 HSPA4P34932 840 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 ADD2P35612 726 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 GYG1P46976 350 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 FKBP1AP62942 108 aaKnown RBP5.99□□□□□ -1.45
LDLR-209ENST00000558528 GPSM2P81274 684 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 POU4F2Q12837 409 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 NMIQ13287 307 aaPredicted RBP5.99□□□□□ -1.45
LDLR-209ENST00000558528 PABPC4Q13310 644 aaKnown RBP eCLIP5.99□□□□□ -1.45
LDLR-209ENST00000558528 LAMC2Q13753 1193 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 CCDC93Q567U6 631 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 LLGL2Q6P1M3 1020 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 RNF180Q86T96 592 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 TTC6Q86TZ1 520 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 CEP120Q8N960 986 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 ATL2Q8NHH9 583 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 TDRD7Q8NHU6 1098 aaKnown RBP5.99□□□□□ -1.45
LDLR-209ENST00000558528 RIN3Q8TB24 985 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 TBC1D16Q8TBP0 767 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 PLD4Q96BZ4 506 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 IL17RAQ96F46 866 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 CAPNS2Q96L46 248 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 GPR101Q96P66 508 aaPredicted RBP5.99□□□□□ -1.45
LDLR-209ENST00000558528 GSX2Q9BZM3 304 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 TM6SF1Q9BZW5 370 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 CD209Q9NNX6 404 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 PCDHB5Q9Y5E4 795 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 MAST3O60307 1309 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 CCDC171Q6TFL3 1326 aa5.99□□□□□ -1.45
LDLR-209ENST00000558528 MYH14Q7Z406 1995 aaKnown RBP5.98□□□□□ -1.45
LDLR-209ENST00000558528 CCDC88AQ3V6T2 1871 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 BCORQ6W2J9 1755 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 NUP98P52948 1817 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 DNAJC25-GNG10A0A024R161 153 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 RGS20O76081 388 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 NAT2P11245 290 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 MAP2K2P36507 400 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 ECE1P42892 770 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 MAP7Q14244 749 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 BRD3Q15059 726 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 NECTIN1Q15223 517 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 ANKRD1Q15327 319 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 IMMTQ16891 758 aaKnown RBP5.98□□□□□ -1.45
LDLR-209ENST00000558528 EFHC2Q5JST6 749 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 NAA16Q6N069 864 aaPredicted RBP5.98□□□□□ -1.45
LDLR-209ENST00000558528 APBB1IPQ7Z5R6 666 aaPredicted RBP5.98□□□□□ -1.45
LDLR-209ENST00000558528 AMOTL1Q8IY63 956 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 PPM1KQ8N3J5 372 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 ZSCAN1Q8NBB4 408 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 UBE2Q2Q8WVN8 375 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 TMEM40Q8WWA1 233 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 NXPE3Q969Y0 559 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 MRIQ9BWK5 157 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 RTFDC1Q9BY42 306 aaPredicted RBP5.98□□□□□ -1.45
LDLR-209ENST00000558528 LSG1Q9H089 658 aaKnown RBP5.98□□□□□ -1.45
LDLR-209ENST00000558528 CLEC4MQ9H2X3 399 aaPredicted RBP5.98□□□□□ -1.45
LDLR-209ENST00000558528 RAI14Q9P0K7 980 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 ABCF2Q9UG63 623 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 VCANP13611 3396 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 ANKRD36CQ5JPF3 1778 aa5.98□□□□□ -1.45
LDLR-209ENST00000558528 BRCA2P51587 3418 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 DICER1Q9UPY3 1922 aaKnown RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 SCN4AP35499 1836 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 AFDNP55196 1824 aaKnown RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 NFKBIEO00221 500 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 PDE2AO00408 941 aaPredicted RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 ZNF213O14771 459 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 NPTXRO95502 500 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 SLC3A2P08195 630 aaKnown RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 FAM153BP0C7A2 387 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 ARAFP10398 606 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 PCP11498 1178 aaKnown RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 PDE6AP16499 860 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 BMP6P22004 513 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms